Chromatin Signature Identifies Monoallelic Gene Expression Across Mammalian Cell Types

por Nag, Anwesha, Vigneau, Sébastien, Savova, Virginia, Zwemer, Lillian M., Gimelbrant, Alexander A.
Publicado 2015

Chromatin signature of widespread monoallelic expression

por Nag, Anwesha, Savova, Virginia, Fung, Ho-Lim, Miron, Alexander, Yuan, Guo-Cheng, Zhang, Kun, Gimelbrant, Alexander A
Publicado 2013

Blood collection in cell-stabilizing tubes does not impact germline DNA quality for pediatric patients

por Wollison, Bruce M., Thai, Edwin, Mckinney, Aimee, Ward, Abigail, Clapp, Andrea, Clinton, Catherine, Nag, Anwesha, Thorner, Aaron R., Gastier-Foster, Julie M., Crompton, Brian D.
Publicado 2017

RNA sequencing-based screen for reactivation of silenced alleles of autosomal genes

por Gupta, Saumya, Lafontaine, Denis L, Vigneau, Sebastien, Mendelevich, Asia, Vinogradova, Svetlana, Igarashi, Kyomi J, Bortvin, Andrew, Alves-Pereira, Clara F, Nag, Anwesha, Gimelbrant, Alexander A
Publicado 2021

Genomic Evolution in a Patient With Lung Adenocarcinoma With a Germline EGFR T790M Mutation

por Mäkinen, Netta, Zhou, Meng, Bemus, Meredith, Nevin, Julius, Nag, Anwesha, Chen, Ruthia, Colson, Yolonda L., Thorner, Aaron R., Oxnard, Geoffrey R., Meyerson, Matthew, Sholl, Lynette M.
Publicado 2021

Circulating Tumor DNA Is Associated with Response and Survival in Patients with Advanced Leiomyosarcoma

por Madanat-Harjuoja, Laura M., Klega, Kelly, Lu, Yao, Shulman, David S., Thorner, Aaron R., Nag, Anwesha, Tap, William D., Reinke, Denise K., Diller, Lisa, Ballman, Karla V., George, Suzanne, Crompton, Brian D.
Publicado 2022

Circulating Tumor DNA as a Biomarker in Patients With Stage III and IV Wilms Tumor: Analysis From a Children's Oncology Group Trial, AREN0533

por Madanat-Harjuoja, Laura M., Renfro, Lindsay A., Klega, Kelly, Tornwall, Brett, Thorner, Aaron R., Nag, Anwesha, Dix, David, Dome, Jeffrey S., Diller, Lisa R., Fernandez, Conrad V., Mullen, Elizabeth A., Crompton, Brian D.
Publicado 2022

Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing

por MacConaill, Laura E., Burns, Robert T., Nag, Anwesha, Coleman, Haley A., Slevin, Michael K., Giorda, Kristina, Light, Madelyn, Lai, Kevin, Jarosz, Mirna, McNeill, Matthew S., Ducar, Matthew D., Meyerson, Matthew, Thorner, Aaron R.
Publicado 2018

Adverse prognostic impact of the loss of STAG2 protein expression in patients with newly diagnosed localised Ewing sarcoma: A report from the Children’s Oncology Group

por Shulman, David S., Chen, Sonja, Hall, David, Nag, Anwesha, Thorner, Aaron R., Lessnick, Stephen L., Stegmaier, Kimberly, Janeway, Katherine A., DuBois, Steven G., Krailo, Mark D., Barkauskas, Donald A., Church, Alanna J., Crompton, Brian D.
Publicado 2022

Cas9 activates the p53 pathway and selects for p53-inactivating mutations

por Enache, Oana M., Rendo, Veronica, Abdusamad, Mai, Lam, Daniel, Davison, Desiree, Pal, Sangita, Currimjee, Naomi, Hess, Julian, Pantel, Sasha, Nag, Anwesha, Thorner, Aaron R., Doench, John G., Vazquez, Francisca, Beroukhim, Rameen, Golub, Todd R., Ben-David, Uri
Publicado 2020

Detection of circulating tumour DNA is associated with inferior outcomes in Ewing sarcoma and osteosarcoma: a report from the Children’s Oncology Group

por Shulman, David S., Klega, Kelly, Imamovic-Tuco, Alma, Clapp, Andrea, Nag, Anwesha, Thorner, Aaron R., Van Allen, Eliezer, Ha, Gavin, Lessnick, Stephen L., Gorlick, Richard, Janeway, Katherine A., Leavey, Patrick J., Mascarenhas, Leo, London, Wendy B., Vo, Kieuhoa T., Stegmaier, Kimberly, Hall, David, Krailo, Mark D., Barkauskas, Donald A., DuBois, Steven G., Crompton, Brian D.
Publicado 2018

Correction: Detection of circulating tumour DNA is associated with inferior outcomes in Ewing sarcoma and osteosarcoma: a report from the Children’s Oncology Group

por Shulman, David S., Klega, Kelly, Imamovic-Tuco, Alma, Clapp, Andrea, Nag, Anwesha, Thorner, Aaron R., Van Allen, Eliezer, Ha, Gavin, Lessnick, Stephen L., Gorlick, Richard, Janeway, Katherine A., Leavey, Patrick J., Mascarenhas, Leo, London, Wendy B., Vo, Kieuhoa T., Stegmaier, Kimberly, Hall, David, Krailo, Mark D., Barkauskas, Donald A., DuBois, Steven G., Crompton, Brian D.
Publicado 2019

Subependymal giant cell astrocytomas in Tuberous Sclerosis Complex have consistent TSC1/TSC2 biallelic inactivation, and no BRAF mutations

por Bongaarts, Anika, Giannikou, Krinio, Reinten, Roy J., Anink, Jasper J., Mills, James D., Jansen, Floor E., Spliet, G.M Wim, den Dunnen, Willfred F.A., Coras, Roland, Blümcke, Ingmar, Paulus, Werner, Scholl, Theresa, Feucht, Martha, Kotulska, Katarzyna, Jozwiak, Sergiusz, Buccoliero, Anna Maria, Caporalini, Chiara, Giordano, Flavio, Genitori, Lorenzo, Söylemezoğlu, Figen, Pimentel, José, Nellist, Mark, Schouten-van Meeteren, Antoinette Y.N., Nag, Anwesha, Mühlebner, Angelika, Kwiatkowski, David J., Aronica, Eleonora
Publicado 2017

Genetic and transcriptional evolution alters cancer cell line drug response

por Ben-David, Uri, Siranosian, Benjamin, Ha, Gavin, Tang, Helen, Oren, Yaara, Hinohara, Kunihiko, Strathdee, Craig A., Dempster, Joshua, Lyons, Nicholas J., Burns, Robert, Nag, Anwesha, Kugener, Guillaume, Cimini, Beth, Tsvetkov, Peter, Maruvka, Yosef E., O’Rourke, Ryan, Garrity, Anthony, Tubelli, Andrew A., Bandopadhayay, Pratiti, Tsherniak, Aviad, Vazquez, Francisca, Wong, Bang, Birger, Chet, Ghandi, Mahmoud, Thorner, Aaron R., Bittker, Joshua A., Meyerson, Matthew, Getz, Gad, Beroukhim, Rameen, Golub, Todd R.
Publicado 2018

Genomic profiling of a randomized trial of interferon-α vs hydroxyurea in MPN reveals mutation-specific responses

por Knudsen, Trine Alma, Skov, Vibe, Stevenson, Kristen, Werner, Lillian, Duke, William, Laurore, Charles, Gibson, Christopher J., Nag, Anwesha, Thorner, Aaron R., Wollison, Bruce, Hansen, Dennis Lund, Ellervik, Christina, El Fassi, Daniel, de Stricker, Karin, Ocias, Lukas Frans, Brabrand, Mette, Bjerrum, Ole Weis, Overgaard, Ulrik Malthe, Frederiksen, Mikael, Kristensen, Thomas Kielsgaard, Kruse, Torben A., Thomassen, Mads, Mourits-Andersen, Torben, Severinsen, Marianne Tang, Stentoft, Jesper, Starklint, Joern, Neuberg, Donna S., Kjaer, Lasse, Larsen, Thomas Stauffer, Hasselbalch, Hans Carl, Lindsley, R. Coleman, Mullally, Ann
Publicado 2022

Dissection of PIK3CA Aberration for Cervical Adenocarcinoma Outcomes

por Chung, Tony K. H., Doran, Graeme, Cheung, Tak-Hong, Yim, So-Fan, Yu, Mei-Yung, Worley, Michael J., Elias, Kevin M., Thorner, Aaron R., Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I., Lau, Kei-Man, Ducar, Matthew D., Wong, Raymond R. Y., Wang, Vivian W., Nag, Anwesha, Wollison, Bruce M., Dalgarno, Audrey, Lee, Jacqueline H. S., Yeung, Suet-Ying, Wong, Lo, Horowitz, Neil S., Davis, Michelle R., Leung, Shuk-On A., Mu, Yi, Mok, Samuel C., Chan, Paul K. S., Lawrence, Michael S., Crum, Christopher P., Chiu, Rossa W. K., Berkowitz, Ross S., Wong, Yick-Fu
Publicado 2021