Multiplex bisulfite PCR resequencing of clinical FFPE DNA

por Korbie, Darren, Lin, Erica, Wall, David, Nair, Shalima S, Stirzaker, Clare, Clark, Sue J, Trau, Matt
Publicado 2015

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

por Skvortsova, Ksenia, Zotenko, Elena, Luu, Phuc-Loi, Gould, Cathryn M., Nair, Shalima S., Clark, Susan J., Stirzaker, Clare
Publicado 2017

Genetic and Epigenetic Regulation in Lingo-1: Effects on Cognitive Function and White Matter Microstructure in a Case-Control Study for Schizophrenia

por Andrews, Jessica L., Zalesky, Andrew, Nair, Shalima, Sullivan, Ryan P., Green, Melissa J., Pantelis, Christos, Newell, Kelly A., Fernandez, Francesca
Publicado 2023

Androgen receptor expression predicts breast cancer survival: the role of genetic and epigenetic events

por Peters, Kate M, Edwards, Stacey L, Nair, Shalima S, French, Juliet D, Bailey, Peter J, Salkield, Kathryn, Stein, Sandra, Wagner, Sarah, Francis, Glenn D, Clark, Susan J, Brown, Melissa A
Publicado 2012

Methylation-capture and Next-Generation Sequencing of free circulating DNA from human plasma

por Warton, Kristina, Lin, Vita, Navin, Tina, Armstrong, Nicola J, Kaplan, Warren, Ying, Kevin, Gloss, Brian, Mangs, Helena, Nair, Shalima S, Hacker, Neville F, Sutherland, Robert L, Clark, Susan J, Samimi, Goli
Publicado 2014

MicroRNA Alterations and Associated Aberrant DNA Methylation Patterns across Multiple Sample Types in Oral Squamous Cell Carcinoma

por Wiklund, Erik D., Gao, Shan, Hulf, Toby, Sibbritt, Tennille, Nair, Shalima, Costea, Daniela Elena, Villadsen, Sune B., Bakholdt, Vivi, Bramsen, Jesper B., Sørensen, Jens A., Krogdahl, Annelise, Clark, Susan J., Kjems, Jørgen
Publicado 2011

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

por Peters, Timothy J, French, Hugh J, Bradford, Stephen T, Pidsley, Ruth, Stirzaker, Clare, Varinli, Hilal, Nair, Shalima, Qu, Wenjia, Song, Jenny, Giles, Katherine A, Statham, Aaron L, Speirs, Helen, Speed, Terence P, Clark, Susan J
Publicado 2019

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer

por Du, Qian, Bert, Saul A., Armstrong, Nicola J., Caldon, C. Elizabeth, Song, Jenny Z., Nair, Shalima S., Gould, Cathryn M., Luu, Phuc-Loi, Peters, Timothy, Khoury, Amanda, Qu, Wenjia, Zotenko, Elena, Stirzaker, Clare, Clark, Susan J.
Publicado 2019

Macrophage development and activation involve coordinated intron retention in key inflammatory regulators

por Green, Immanuel D, Pinello, Natalia, Song, Renhua, Lee, Quintin, Halstead, James M, Kwok, Chau-To, Wong, Alex C H, Nair, Shalima S, Clark, Susan J, Roediger, Ben, Schmitz, Ulf, Larance, Mark, Hayashi, Rippei, Rasko, John E J, Wong, Justin J-L
Publicado 2020

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten

por Nair, Shalima S., Luu, Phuc-Loi, Qu, Wenjia, Maddugoda, Madhavi, Huschtscha, Lily, Reddel, Roger, Chenevix-Trench, Georgia, Toso, Martina, Kench, James G., Horvath, Lisa G., Hayes, Vanessa M., Stricker, Phillip D., Hughes, Timothy P., White, Deborah L., Rasko, John E. J., Wong, Justin J.-L., Clark, Susan J.
Publicado 2018

Widespread Aberrant Alternative Splicing despite Molecular Remission in Chronic Myeloid Leukaemia Patients

por Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., Rasko, John E.J.
Publicado 2020

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer

por Valdés-Mora, Fátima, Gould, Cathryn M., Colino-Sanguino, Yolanda, Qu, Wenjia, Song, Jenny Z., Taylor, Kylie M., Buske, Fabian A., Statham, Aaron L., Nair, Shalima S., Armstrong, Nicola J., Kench, James G., Lee, Kenneth M. L., Horvath, Lisa G., Qiu, Minru, Ilinykh, Alexei, Yeo-Teh, Nicole S., Gallego-Ortega, David, Stirzaker, Clare, Clark, Susan J.
Publicado 2017

Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer

por Achinger-Kawecka, Joanna, Valdes-Mora, Fatima, Luu, Phuc-Loi, Giles, Katherine A., Caldon, C. Elizabeth, Qu, Wenjia, Nair, Shalima, Soto, Sebastian, Locke, Warwick J., Yeo-Teh, Nicole S., Gould, Cathryn M., Du, Qian, Smith, Grady C., Ramos, Irene R., Fernandez, Kristine F., Hoon, Dave S., Gee, Julia M. W., Stirzaker, Clare, Clark, Susan J.
Publicado 2020

Enduring epigenetic landmarks define the cancer microenvironment

por Pidsley, Ruth, Lawrence, Mitchell G., Zotenko, Elena, Niranjan, Birunthi, Statham, Aaron, Song, Jenny, Chabanon, Roman M., Qu, Wenjia, Wang, Hong, Richards, Michelle, Nair, Shalima S., Armstrong, Nicola J., Nim, Hieu T., Papargiris, Melissa, Balanathan, Preetika, French, Hugh, Peters, Timothy, Norden, Sam, Ryan, Andrew, Pedersen, John, Kench, James, Daly, Roger J., Horvath, Lisa G., Stricker, Phillip, Frydenberg, Mark, Taylor, Renea A., Stirzaker, Clare, Risbridger, Gail P., Clark, Susan J.
Publicado 2018

Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes

por Bradford, Stephen T., Nair, Shalima S., Statham, Aaron L., van Dijk, Susan J., Peters, Timothy J., Anwar, Firoz, French, Hugh J., von Martels, Julius Z. H., Sutcliffe, Brodie, Maddugoda, Madhavi P., Peranec, Michelle, Varinli, Hilal, Arnoldy, Rosanna, Buckley, Michael, Ross, Jason P., Zotenko, Elena, Song, Jenny Z., Stirzaker, Clare, Bauer, Denis C., Qu, Wenjia, Swarbrick, Michael M., Lutgers, Helen L., Lord, Reginald V., Samaras, Katherine, Molloy, Peter L., Clark, Susan J.
Publicado 2019