Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes

por Nakatani, Yoichiro, McLysaght, Aoife
Publicado 2017

Data mining tools for the Saccharomyces cerevisiae morphological database

por Saito, Taro L., Sese, Jun, Nakatani, Yoichiro, Sano, Fumi, Yukawa, Masashi, Ohya, Yoshikazu, Morishita, Shinichi
Publicado 2005

Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

por Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa
Publicado 2021

Publisher Correction: Reconstruction of proto-vertebrate, protocyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

por Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa
Publicado 2021

An integrative epigenomic approach identifies ELF3 as an oncogenic regulator in ASCL1‐positive neuroendocrine carcinoma

por Horie, Masafumi, Tanaka, Hidenori, Suzuki, Masami, Sato, Yoshihiko, Takata, So, Takai, Erina, Miyashita, Naoya, Saito, Akira, Nakatani, Yoichiro, Yachida, Shinichi
Publicado 2023

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

por Qu, Wei, Hashimoto, Shin-ichi, Shimada, Atsuko, Nakatani, Yoichiro, Ichikawa, Kazuki, Saito, Taro L., Ogoshi, Katsumi, Matsushima, Kouji, Suzuki, Yutaka, Sugano, Sumio, Takeda, Hiroyuki, Morishita, Shinichi
Publicado 2012

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species

por Nakatani, Yoichiro, Mello, Cecilia C., Hashimoto, Shin-ichi, Shimada, Atsuko, Nakamura, Ryohei, Tsukahara, Tatsuya, Qu, Wei, Yoshimura, Jun, Suzuki, Yutaka, Sugano, Sumio, Takeda, Hiroyuki, Fire, Andrew, Morishita, Shinichi
Publicado 2015

High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer

por Hashimoto, Shin-ichi, Qu, Wei, Ahsan, Budrul, Ogoshi, Katsumi, Sasaki, Atsushi, Nakatani, Yoichiro, Lee, Yongjun, Ogawa, Masako, Ametani, Akio, Suzuki, Yutaka, Sugano, Sumio, Lee, Clarence C., Nutter, Robert C., Morishita, Shinichi, Matsushima, Kouji
Publicado 2009

CTCF looping is established during gastrulation in medaka embryos

por Nakamura, Ryohei, Motai, Yuichi, Kumagai, Masahiko, Wike, Candice L., Nishiyama, Haruyo, Nakatani, Yoichiro, Durand, Neva C., Kondo, Kaori, Kondo, Takashi, Tsukahara, Tatsuya, Shimada, Atsuko, Cairns, Bradley R., Aiden, Erez Lieberman, Morishita, Shinichi, Takeda, Hiroyuki
Publicado 2021

UTGB/medaka: genomic resource database for medaka biology

por Ahsan, Budrul, Kobayashi, Daisuke, Yamada, Tomoyuki, Kasahara, Masahiro, Sasaki, Shin, Saito, Taro L., Nagayasu, Yukinobu, Doi, Koichiro, Nakatani, Yoichiro, Qu, Wei, Jindo, Tomoko, Shimada, Atsuko, Naruse, Kiyoshi, Toyoda, Atsushi, Kuroki, Yoko, Fujiyama, Asao, Sasaki, Takashi, Shimizu, Atsushi, Asakawa, Shuichi, Shimizu, Nobuyoshi, Hashimoto, Shin-ichi, Yang, Jun, Lee, Yongjun, Matsushima, Kouji, Sugano, Sumio, Sakaizumi, Mitsuru, Narita, Takanori, Ohishi, Kazuko, Haga, Shinobu, Ohta, Fumiko, Nomoto, Hisayo, Nogata, Keiko, Morishita, Tomomi, Endo, Tomoko, Shin-I, Tadasu, Takeda, Hiroyuki, Kohara, Yuji, Morishita, Shinichi
Publicado 2008

Comprehensive Genomic Profiling of Neuroendocrine Carcinomas of the Gastrointestinal System

por Yachida, Shinichi, Totoki, Yasushi, Noë, Michaël, Nakatani, Yoichiro, Horie, Masafumi, Kawasaki, Kenta, Nakamura, Hiromi, Saito-Adachi, Mihoko, Suzuki, Masami, Takai, Erina, Hama, Natsuko, Higuchi, Ryota, Hirono, Seiko, Shiba, Satoshi, Kato, Mamoru, Furukawa, Eisaku, Arai, Yasuhito, Rokutan, Hirofumi, Hashimoto, Taiki, Mitsunaga, Shuichi, Kanda, Mitsuro, Tanaka, Hidenori, Takata, So, Shimomura, Ayaka, Oshima, Minoru, Hackeng, Wenzel M., Okumura, Tomoyuki, Okano, Keiichi, Yamamoto, Masakazu, Yamaue, Hiroki, Morizane, Chigusa, Arihiro, Koji, Furukawa, Toru, Sato, Toshiro, Kiyono, Tohru, Brosens, Lodewijk A.A., Wood, Laura D., Hruban, Ralph H., Shibata, Tatsuhiro
Publicado 2022