Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power

por Noorbakhsh, Javad, Kim, Hyunsoo, Namburi, Sandeep, Chuang, Jeffrey H.
Publicado 2018

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens

por Bais, Preeti, Namburi, Sandeep, Gatti, Daniel M, Zhang, Xinyu, Chuang, Jeffrey H
Publicado 2017

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

por Zhan, Yingqian Ada, Wray, Charles Gregory, Namburi, Sandeep, Glantz, Spencer T., Laubenbacher, Reinhard, Chuang, Jeffrey H.
Publicado 2019

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma

por Chae, Young Kwang, Anker, Jonathan F., Bais, Preeti, Namburi, Sandeep, Giles, Francis J., Chuang, Jeffrey H.
Publicado 2017

Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma

por Chae, Young Kwang, Anker, Jonathan F., Oh, Michael S., Bais, Preeti, Namburi, Sandeep, Agte, Sarita, Giles, Francis J., Chuang, Jeffrey H.
Publicado 2019

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

por Noorbakhsh, Javad, Farahmand, Saman, Foroughi pour, Ali, Namburi, Sandeep, Caruana, Dennis, Rimm, David, Soltanieh-ha, Mohammad, Zarringhalam, Kourosh, Chuang, Jeffrey H.
Publicado 2020

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

por Lee, Byoungkoo, Wang, Jiahui, Cai, Liuyang, Kim, Minji, Namburi, Sandeep, Tjong, Harianto, Feng, Yuliang, Wang, Ping, Tang, Zhonghui, Abbas, Ahmed, Wei, Chia-Lin, Ruan, Yijun, Li, Sheng
Publicado 2020

Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells

por Szulwach, Keith E., Li, Xuekun, Li, Yujing, Song, Chun-Xiao, Han, Ji Woong, Kim, SangSung, Namburi, Sandeep, Hermetz, Karen, Kim, Julie J., Rudd, M. Katharine, Yoon, Young-Sup, Ren, Bing, He, Chuan, Jin, Peng
Publicado 2011

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence

por Zhao, Yue, Pan, Ziwei, Namburi, Sandeep, Pattison, Andrew, Posner, Atara, Balachander, Shiva, Paisie, Carolyn A., Reddi, Honey V, Rueter, Jens, Gill, Anthony J, Fox, Stephen, Raghav, Kanwal P.S., Flynn, William F, Tothill, Richard W., Li, Sheng, Karuturi, R. Krishna Murthy, George, Joshy
Publicado 2020

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

por Kim, Hoon, Nguyen, Nam-Phuong, Turner, Kristen, Wu, Sihan, Gujar, Amit D., Luebeck, Jens, Liu, Jihe, Deshpande, Viraj, Rajkumar, Utkrisht, Namburi, Sandeep, Amin, Samirkumar B., Yi, Eunhee, Menghi, Francesca, Schulte, Johannes H., Henssen, Anton G., Chang, Howard Y., Beck, Christine, Mischel, Paul S., Bafna, Vineet, Verhaak, Roel G.W.
Publicado 2020