RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

por Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Publicado 2018

Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology

por Marine, Rachel L, Nasko, Daniel J, Wray, Jeffrey, Polson, Shawn W, Wommack, K Eric
Publicado 2017

Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations

por Chopyk, Jessica, Allard, Sarah, Nasko, Daniel J., Bui, Anthony, Mongodin, Emmanuel F., Sapkota, Amy R.
Publicado 2018

Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton

por Nasko, Daniel J., Chopyk, Jessica, Sakowski, Eric G., Ferrell, Barbra D., Polson, Shawn W., Wommack, K. Eric
Publicado 2018

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

por Chopyk, Jessica, Nasko, Daniel J., Allard, Sarah, Bui, Anthony, Pop, Mihai, Mongodin, Emmanuel F., Sapkota, Amy R.
Publicado 2020

CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes

por Nasko, Daniel J., Ferrell, Barbra D., Moore, Ryan M., Bhavsar, Jaysheel D., Polson, Shawn W., Wommack, K. Eric
Publicado 2019

Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation

por Chopyk, Jessica, Kulkarni, Prachi, Nasko, Daniel J., Bradshaw, Rhodel, Kniel, Kalmia E., Chiu, Pei, Sharma, Manan, Sapkota, Amy R.
Publicado 2019

VIROME: a standard operating procedure for analysis of viral metagenome sequences

por Wommack, K. Eric, Bhavsar, Jaysheel, Polson, Shawn W., Chen, Jing, Dumas, Michael, Srinivasiah, Sharath, Furman, Megan, Jamindar, Sanchita, Nasko, Daniel J.
Publicado 2012

The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome

por Johnson, Timothy A., Looft, Torey, Severin, Andrew J., Bayles, Darrell O., Nasko, Daniel J., Wommack, K. Eric, Howe, Adina, Allen, Heather K.
Publicado 2017

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

por Balaji, Advait, Kille, Bryce, Kappell, Anthony D., Godbold, Gene D., Diep, Madeline, Elworth, R. A. Leo, Qian, Zhiqin, Albin, Dreycey, Nasko, Daniel J., Shah, Nidhi, Pop, Mihai, Segarra, Santiago, Ternus, Krista L., Treangen, Todd J.
Publicado 2022

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P...

por Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, Allard, Sarah M., Bazinet, Adam L., Bergman, Nicholas H., Brown, Alexis, Caporaso, J. Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P., Hasan, Nur A., Kralj, Jason, Luethy, Paul M., Milton, Donald K., Ondov, Brian D., Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M., Rosovitz, M. J., Sakowski, Eric G., Schliebs, Nils Oliver, Sommer, Daniel D., Ternus, Krista L., Uritskiy, Gherman, Zhang, Sean X., Pop, Mihai, Treangen, Todd J.
Publicado 2018