Computational identification of strain-, species- and genus-specific proteins

por Mazumder, Raja, Natale, Darren A, Murthy, Sudhir, Thiagarajan, Rathi, Wu, Cathy H
Publicado 2005

Community annotation in biology

por Mazumder, Raja, Natale, Darren A, Julio, Jessica Anne Ecalnir, Yeh, Lai-Su, Wu, Cathy H
Publicado 2010

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

por Natale, Darren A, Shankavaram, Uma T, Galperin, Michael Y, Wolf, Yuri I, Aravind, L, Koonin, Eugene V
Publicado 2000

Use of the Protein Ontology for Multi-Faceted Analysis of Biological Processes: A Case Study of the Spindle Checkpoint

por Ross, Karen E., Arighi, Cecilia N., Ren, Jia, Natale, Darren A., Huang, Hongzhan, Wu, Cathy H.
Publicado 2013

Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

por Chen, Chuming, Natale, Darren A., Finn, Robert D., Huang, Hongzhan, Zhang, Jian, Wu, Cathy H., Mazumder, Raja
Publicado 2011

Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

por Arighi, Cecilia, Shamovsky, Veronica, Masci, Anna Maria, Ruttenberg, Alan, Smith, Barry, Natale, Darren A., Wu, Cathy, D’Eustachio, Peter
Publicado 2015

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

por Arighi, Cecilia, Shamovsky, Veronica, Masci, Anna Maria, Ruttenberg, Alan, Smith, Barry, Natale, Darren A., Wu, Cathy, D’Eustachio, Peter
Publicado 2015

BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks

por Lang, Paul F., Chebaro, Yassmine, Zheng, Xiaoyue, P. Sekar, John A., Shaikh, Bilal, Natale, Darren A., Karr, Jonathan R.
Publicado 2020

Protein ontology on the semantic web for knowledge discovery

por Chen, Chuming, Huang, Hongzhan, Ross, Karen E., Cowart, Julie E., Arighi, Cecilia N., Wu, Cathy H., Natale, Darren A.
Publicado 2020

PIRSitePredict for protein functional site prediction using position-specific rules

por Chen, Chuming, Wang, Qinghua, Huang, Hongzhan, Vinayaka, Cholanayakanahalli R, Garavelli, John S, Arighi, Cecilia N, Natale, Darren A, Wu, Cathy H
Publicado 2019

TGF-beta signaling proteins and the Protein Ontology

por Arighi, Cecilia N, Liu, Hongfang, Natale, Darren A, Barker, Winona C, Drabkin, Harold, Blake, Judith A, Smith, Barry, Wu, Cathy H
Publicado 2009

Framework for a Protein Ontology

por Natale, Darren A, Arighi, Cecilia N, Barker, Winona C, Blake, Judith, Chang, Ti-Cheng, Hu, Zhangzhi, Liu, Hongfang, Smith, Barry, Wu, Cathy H
Publicado 2007

OMIT: Dynamic, Semi-Automated Ontology Development for the microRNA Domain

por Huang, Jingshan, Dang, Jiangbo, Borchert, Glen M., Eilbeck, Karen, Zhang, He, Xiong, Min, Jiang, Weijian, Wu, Hao, Blake, Judith A., Natale, Darren A., Tan, Ming
Publicado 2014

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model

por Gogate, Nikhita, Lyman, Daniel, Bell, Amanda, Cauley, Edmund, Crandall, Keith A, Joseph, Ashia, Kahsay, Robel, Natale, Darren A, Schriml, Lynn M, Sen, Sabyasach, Mazumder, Raja
Publicado 2021

The Universal Protein Resource (UniProt): an expanding universe of protein information

por Wu, Cathy H., Apweiler, Rolf, Bairoch, Amos, Natale, Darren A., Barker, Winona C., Boeckmann, Brigitte, Ferro, Serenella, Gasteiger, Elisabeth, Huang, Hongzhan, Lopez, Rodrigo, Magrane, Michele, Martin, Maria J., Mazumder, Raja, O'Donovan, Claire, Redaschi, Nicole, Suzek, Baris
Publicado 2006

The Universal Protein Resource (UniProt)

por Bairoch, Amos, Apweiler, Rolf, Wu, Cathy H., Barker, Winona C., Boeckmann, Brigitte, Ferro, Serenella, Gasteiger, Elisabeth, Huang, Hongzhan, Lopez, Rodrigo, Magrane, Michele, Martin, Maria J., Natale, Darren A., O'Donovan, Claire, Redaschi, Nicole, Yeh, Lai-Su L.
Publicado 2005

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data

por Huang, Jingshan, Gutierrez, Fernando, Strachan, Harrison J., Dou, Dejing, Huang, Weili, Smith, Barry, Blake, Judith A., Eilbeck, Karen, Natale, Darren A., Lin, Yu, Wu, Bin, Silva, Nisansa de, Wang, Xiaowei, Liu, Zixing, Borchert, Glen M., Tan, Ming, Ruttenberg, Alan
Publicado 2016

The Protein Ontology: a structured representation of protein forms and complexes

por Natale, Darren A., Arighi, Cecilia N., Barker, Winona C., Blake, Judith A., Bult, Carol J., Caudy, Michael, Drabkin, Harold J., D’Eustachio, Peter, Evsikov, Alexei V., Huang, Hongzhan, Nchoutmboube, Jules, Roberts, Natalia V., Smith, Barry, Zhang, Jian, Wu, Cathy H.
Publicado 2011

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources

por Huang, Liang-Chin, Ross, Karen E., Baffi, Timothy R., Drabkin, Harold, Kochut, Krzysztof J., Ruan, Zheng, D’Eustachio, Peter, McSkimming, Daniel, Arighi, Cecilia, Chen, Chuming, Natale, Darren A., Smith, Cynthia, Gaudet, Pascale, Newton, Alexandra C., Wu, Cathy, Kannan, Natarajan
Publicado 2018

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology

por Huang, Jingshan, Eilbeck, Karen, Smith, Barry, Blake, Judith A., Dou, Dejing, Huang, Weili, Natale, Darren A., Ruttenberg, Alan, Huan, Jun, Zimmermann, Michael T., Jiang, Guoqian, Lin, Yu, Wu, Bin, Strachan, Harrison J., He, Yongqun, Zhang, Shaojie, Wang, Xiaowei, Liu, Zixing, Borchert, Glen M., Tan, Ming
Publicado 2016