Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

por Naval-Sánchez, Marina, Potier, Delphine, Hulselmans, Gert, Christiaens, Valerie, Aerts, Stein
Publicado 2015

Organization of gene programs revealed by unsupervised analysis of diverse gene–trait associations

por Mizikovsky, Dalia, Naval Sanchez, Marina, Nefzger, Christian M, Cuellar Partida, Gabriel, Palpant, Nathan J
Publicado 2022

Nuclear receptors connect progenitor transcription factors to cell cycle control

por Neto, Marta, Naval-Sánchez, Marina, Potier, Delphine, Pereira, Paulo S., Geerts, Dirk, Aerts, Stein, Casares, Fernando
Publicado 2017

Micrococcal nuclease sequencing of porcine sperm suggests enriched co-location between retained histones and genomic regions related to semen quality and early embryo development

por Gòdia, Marta, Lian, Yu, Naval-Sanchez, Marina, Ponte, Inma, Rodríguez-Gil, Joan Enric, Sanchez, Armand, Clop, Alex
Publicado 2023

Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification

por Aerts, Stein, Quan, Xiao-Jiang, Claeys, Annelies, Naval Sanchez, Marina, Tate, Phillip, Yan, Jiekun, Hassan, Bassem A.
Publicado 2010

Systems Biology Reveals NR2F6 and TGFB1 as Key Regulators of Feed Efficiency in Beef Cattle

por Alexandre, Pâmela A., Naval-Sanchez, Marina, Porto-Neto, Laercio R., Ferraz, José Bento S., Reverter, Antonio, Fukumasu, Heidge
Publicado 2019

Changed Patterns of Genomic Variation Following Recent Domestication: Selection Sweeps in Farmed Atlantic Salmon

por Naval-Sanchez, Marina, McWilliam, Sean, Evans, Bradley, Yáñez, José M., Houston, Ross D., Kijas, James W.
Publicado 2020

Dynamics of Gene Co-expression Networks in Time-Series Data: A Case Study in Drosophila melanogaster Embryogenesis

por Lau, Li Yieng, Reverter, Antonio, Hudson, Nicholas J., Naval-Sanchez, Marina, Fortes, Marina R. S., Alexandre, Pâmela A.
Publicado 2020

Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

por Mohamed, Amin R., Naval-Sanchez, Marina, Menzies, Moira, Evans, Bradley, King, Harry, Reverter, Antonio, Kijas, James W.
Publicado 2022

Benchmarking of ATAC Sequencing Data From BGI’s Low-Cost DNBSEQ-G400 Instrument for Identification of Open and Occupied Chromatin Regions

por Naval-Sanchez, Marina, Deshpande, Nikita, Tran, Minh, Zhang, Jingyu, Alhomrani, Majid, Alsanie, Walaa, Nguyen, Quan, Nefzger, Christian M.
Publicado 2022

Chromatin accessibility and regulatory vocabulary across indicine cattle tissues

por Alexandre, Pâmela A., Naval-Sánchez, Marina, Menzies, Moira, Nguyen, Loan T., Porto-Neto, Laercio R., Fortes, Marina R. S., Reverter, Antonio
Publicado 2021

Evolution of Sex Determination Loci in Atlantic Salmon

por Kijas, James, McWilliam, Sean, Naval Sanchez, Marina, Kube, Peter, King, Harry, Evans, Bradley, Nome, Torfinn, Lien, Sigbjørn, Verbyla, Klara
Publicado 2018

Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB

por Naval-Sánchez, Marina, Porto-Neto, Laercio R., Cardoso, Diercles F., Hayes, Ben J., Daetwyler, Hans D., Kijas, James, Reverter, Antonio
Publicado 2020

Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions

por Naval-Sánchez, Marina, Potier, Delphine, Haagen, Lotte, Sánchez, Máximo, Munck, Sebastian, Van de Sande, Bram, Casares, Fernando, Christiaens, Valerie, Aerts, Stein
Publicado 2013

Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance

por Alexandre, Pâmela A., Hudson, Nicholas J., Lehnert, Sigrid A., Fortes, Marina R. S., Naval-Sánchez, Marina, Nguyen, Loan T., Porto-Neto, Laercio R., Reverter, Antonio
Publicado 2020

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

por Nguyen, Quan H, Tellam, Ross L, Naval-Sanchez, Marina, Porto-Neto, Laercio R, Barendse, William, Reverter, Antonio, Hayes, Benjamin, Kijas, James, Dalrymple, Brian P
Publicado 2018

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

por Janky, Rekin's, Verfaillie, Annelien, Imrichová, Hana, Van de Sande, Bram, Standaert, Laura, Christiaens, Valerie, Hulselmans, Gert, Herten, Koen, Naval Sanchez, Marina, Potier, Delphine, Svetlichnyy, Dmitry, Kalender Atak, Zeynep, Fiers, Mark, Marine, Jean-Christophe, Aerts, Stein
Publicado 2014

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

por Naval-Sanchez, Marina, Nguyen, Quan, McWilliam, Sean, Porto-Neto, Laercio R., Tellam, Ross, Vuocolo, Tony, Reverter, Antonio, Perez-Enciso, Miguel, Brauning, Rudiger, Clarke, Shannon, McCulloch, Alan, Zamani, Wahid, Naderi, Saeid, Rezaei, Hamid Reza, Pompanon, Francois, Taberlet, Pierre, Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Jhangiani, Shalini N., Cockett, Noelle, Daetwyler, Hans, Kijas, James
Publicado 2018

Nicotinamide riboside attenuates age-associated metabolic and functional changes in hematopoietic stem cells

por Sun, Xuan, Cao, Benjamin, Naval-Sanchez, Marina, Pham, Tony, Sun, Yu Bo Yang, Williams, Brenda, Heazlewood, Shen Y., Deshpande, Nikita, Li, Jinhua, Kraus, Felix, Rae, James, Nguyen, Quan, Yari, Hamed, Schröder, Jan, Heazlewood, Chad K., Fulton, Madeline, Hatwell-Humble, Jessica, Das Gupta, Kaustav, Kapetanovic, Ronan, Chen, Xiaoli, Sweet, Matthew J., Parton, Robert G., Ryan, Michael T., Polo, Jose M., Nefzger, Christian M., Nilsson, Susan K.
Publicado 2021

Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

por Allais-Bonnet, Aurélie, Hintermann, Aurélie, Deloche, Marie-Christine, Cornette, Raphaël, Bardou, Philippe, Naval-Sanchez, Marina, Pinton, Alain, Haruda, Ashleigh, Grohs, Cécile, Zakany, Jozsef, Bigi, Daniele, Medugorac, Ivica, Putelat, Olivier, Greyvenstein, Ockert, Hadfield, Tracy, Jemaa, Slim Ben, Bunevski, Gjoko, Menzi, Fiona, Hirter, Nathalie, Paris, Julia M, Hedges, John, Palhiere, Isabelle, Rupp, Rachel, Lenstra, Johannes A, Gidney, Louisa, Lesur, Joséphine, Schafberg, Renate, Stache, Michael, Wandhammer, Marie-Dominique, Arbogast, Rose-Marie, Guintard, Claude, Blin, Amandine, Boukadiri, Abdelhak, Rivière, Julie, Esquerré, Diane, Donnadieu, Cécile, Danchin-Burge, Coralie, Reich, Coralie M, Riley, David G, van Marle-Koster, Este, Cockett, Noelle, Hayes, Benjamin J, Drögemüller, Cord, Kijas, James, Pailhoux, Eric, Tosser-Klopp, Gwenola, Duboule, Denis, Capitan, Aurélien
Publicado 2021