Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

por Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A., Debelius, Justine, Morton, James T., Hyde, Embriette, Robbins-Pianka, Adam, Knight, Rob
Publicado 2017

Open-Source Sequence Clustering Methods Improve the State Of the Art

por Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob
Publicado 2016

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

por Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A., Kopylova, Evguenia, Morton, James T., Zech Xu, Zhenjiang, Kightley, Eric P., Thompson, Luke R., Hyde, Embriette R., Gonzalez, Antonio, Knight, Rob
Publicado 2017

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

por Janssen, Stefan, McDonald, Daniel, Gonzalez, Antonio, Navas-Molina, Jose A., Jiang, Lingjing, Xu, Zhenjiang Zech, Winker, Kevin, Kado, Deborah M., Orwoll, Eric, Manary, Mark, Mirarab, Siavash, Knight, Rob
Publicado 2018

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

por Hyde, Embriette R., Navas-Molina, Jose A., Song, Se Jin, Kueneman, Jordan G., Ackermann, Gail, Cardona, Cesar, Humphrey, Gregory, Boyer, Don, Weaver, Tom, Mendelson, Joseph R., McKenzie, Valerie J., Gilbert, Jack A., Knight, Rob
Publicado 2016

Balance Trees Reveal Microbial Niche Differentiation

por Morton, James T., Sanders, Jon, Quinn, Robert A., McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A., Song, Se Jin, Metcalf, Jessica L., Hyde, Embriette R., Lladser, Manuel, Dorrestein, Pieter C., Knight, Rob
Publicado 2017

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

por Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A., Walters, William A., Ursell, Luke K., Gibbons, Sean M., Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C., Gilbert, Jack A., Huse, Susan M., Zhou, Hong-Wei, Knight, Rob, Caporaso, J. Gregory
Publicado 2014

From Sample to Multi-Omics Conclusions in under 48 Hours

por Quinn, Robert A., Navas-Molina, Jose A., Hyde, Embriette R., Song, Se Jin, Vázquez-Baeza, Yoshiki, Humphrey, Greg, Gaffney, James, Minich, Jeremiah J., Melnik, Alexey V., Herschend, Jakob, DeReus, Jeff, Durant, Austin, Dutton, Rachel J., Khosroheidari, Mahdieh, Green, Clifford, da Silva, Ricardo, Dorrestein, Pieter C., Knight, Rob
Publicado 2016

Qiita: rapid, web-enabled microbiome meta-analysis

por Gonzalez, Antonio, Navas-Molina, Jose A., Kosciolek, Tomasz, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Ackermann, Gail, DeReus, Jeff, Janssen, Stefan, Swafford, Austin D., Orchanian, Stephanie B., Sanders, Jon G., Shorenstein, Joshua, Holste, Hannes, Petrus, Semar, Robbins-Pianka, Adam, Brislawn, Colin J., Wang, Mingxun, Rideout, Jai Ram, Bolyen, Evan, Dillon, Matthew, Caporaso, J Gregory, Dorrestein, Pieter C., Knight, Rob
Publicado 2018

A communal catalogue reveals Earth’s multiscale microbial diversity

por Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., Tripathi, Anupriya, Gibbons, Sean M., Ackermann, Gail, Navas-Molina, Jose A., Janssen, Stefan, Kopylova, Evguenia, Vázquez-Baeza, Yoshiki, González, Antonio, Morton, James T., Mirarab, Siavash, Zech Xu, Zhenjiang, Jiang, Lingjing, Haroon, Mohamed F., Kanbar, Jad, Zhu, Qiyun, Jin Song, Se, Kosciolek, Tomasz, Bokulich, Nicholas A., Lefler, Joshua, Brislawn, Colin J., Humphrey, Gregory, Owens, Sarah M., Hampton-Marcell, Jarrad, Berg-Lyons, Donna, McKenzie, Valerie, Fierer, Noah, Fuhrman, Jed A., Clauset, Aaron, Stevens, Rick L., Shade, Ashley, Pollard, Katherine S., Goodwin, Kelly D., Jansson, Janet K., Gilbert, Jack A., Knight, Rob
Publicado 2017

American Gut: an Open Platform for Citizen Science Microbiome Research

por McDonald, Daniel, Hyde, Embriette, Debelius, Justine W., Morton, James T., Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A., Behsaz, Bahar, Brennan, Caitriona, Chen, Yingfeng, DeRight Goldasich, Lindsay, Dorrestein, Pieter C., Dunn, Robert R., Fahimipour, Ashkaan K., Gaffney, James, Gilbert, Jack A., Gogul, Grant, Green, Jessica L., Hugenholtz, Philip, Humphrey, Greg, Huttenhower, Curtis, Jackson, Matthew A., Janssen, Stefan, Jeste, Dilip V., Jiang, Lingjing, Kelley, Scott T., Knights, Dan, Kosciolek, Tomasz, Ladau, Joshua, Leach, Jeff, Marotz, Clarisse, Meleshko, Dmitry, Melnik, Alexey V., Metcalf, Jessica L., Mohimani, Hosein, Montassier, Emmanuel, Navas-Molina, Jose, Nguyen, Tanya T., Peddada, Shyamal, Pevzner, Pavel, Pollard, Katherine S., Rahnavard, Gholamali, Robbins-Pianka, Adam, Sangwan, Naseer, Shorenstein, Joshua, Smarr, Larry, Song, Se Jin, Spector, Timothy, Swafford, Austin D., Thackray, Varykina G., Thompson, Luke R., Tripathi, Anupriya, Vázquez-Baeza, Yoshiki, Vrbanac, Alison, Wischmeyer, Paul, Wolfe, Elaine, Zhu, Qiyun, Knight, Rob
Publicado 2018