Faster SARS-CoV-2 sequence validation and annotation for GenBank using VADR

por Nawrocki, Eric P
Publicado 2022

Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

por Nawrocki, Eric P, Eddy, Sean R
Publicado 2007

Infernal 1.1: 100-fold faster RNA homology searches

por Nawrocki, Eric P., Eddy, Sean R.
Publicado 2013

Special Focus: Bioinformatics

por Nawrocki, Eric P., Burge, Sarah W.
Publicado 2013

Computational identification of functional RNA homologs in metagenomic data

por Nawrocki, Eric P., Eddy, Sean R.
Publicado 2013

Group I introns are widespread in archaea

por Nawrocki, Eric P, Jones, Thomas A, Eddy, Sean R
Publicado 2018

RNIE: genome-wide prediction of bacterial intrinsic terminators

por Gardner, Paul P., Barquist, Lars, Bateman, Alex, Nawrocki, Eric P., Weinberg, Zasha
Publicado 2011

VADR: validation and annotation of virus sequence submissions to GenBank

por Schäffer, Alejandro A., Hatcher, Eneida L., Yankie, Linda, Shonkwiler, Lara, Brister, J. Rodney, Karsch-Mizrachi, Ilene, Nawrocki, Eric P.
Publicado 2020

Virus Variation Resource – improved response to emergent viral outbreaks

por Hatcher, Eneida L., Zhdanov, Sergey A., Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P., Ostapchuck, Yuri, Schäffer, Alejandro A., Brister, J. Rodney
Publicado 2017

Rfam 11.0: 10 years of RNA families

por Burge, Sarah W., Daub, Jennifer, Eberhardt, Ruth, Tate, John, Barquist, Lars, Nawrocki, Eric P., Eddy, Sean R., Gardner, Paul P., Bateman, Alex
Publicado 2013

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

por Schäffer, Alejandro A., McVeigh, Richard, Robbertse, Barbara, Schoch, Conrad L., Johnston, Anjanette, Underwood, Beverly A., Karsch-Mizrachi, Ilene, Nawrocki, Eric P.
Publicado 2021

NCBI prokaryotic genome annotation pipeline

por Tatusova, Tatiana, DiCuccio, Michael, Badretdin, Azat, Chetvernin, Vyacheslav, Nawrocki, Eric P., Zaslavsky, Leonid, Lomsadze, Alexandre, Pruitt, Kim D., Borodovsky, Mark, Ostell, James
Publicado 2016

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

por Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I
Publicado 2018

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

por McDonald, Daniel, Price, Morgan N, Goodrich, Julia, Nawrocki, Eric P, DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob, Hugenholtz, Philip
Publicado 2012

Rfam: updates to the RNA families database

por Gardner, Paul P., Daub, Jennifer, Tate, John G., Nawrocki, Eric P., Kolbe, Diana L., Lindgreen, Stinus, Wilkinson, Adam C., Finn, Robert D., Griffiths-Jones, Sam, Eddy, Sean R., Bateman, Alex
Publicado 2009

Rfam: Wikipedia, clans and the “decimal” release

por Gardner, Paul P., Daub, Jennifer, Tate, John, Moore, Benjamin L., Osuch, Isabelle H., Griffiths-Jones, Sam, Finn, Robert D., Nawrocki, Eric P., Kolbe, Diana L., Eddy, Sean R., Bateman, Alex
Publicado 2011

Rfam 12.0: updates to the RNA families database

por Nawrocki, Eric P., Burge, Sarah W., Bateman, Alex, Daub, Jennifer, Eberhardt, Ruth Y., Eddy, Sean R., Floden, Evan W., Gardner, Paul P., Jones, Thomas A., Tate, John, Finn, Robert D.
Publicado 2014

Meeting report of the RNA Ontology Consortium January 8-9, 2011

por Birmingham, Amanda, Clemente, Jose C., Desai, Narayan, Gilbert, Jack, Gonzalez, Antonio, Kyrpides, Nikos, Meyer, Folker, Nawrocki, Eric, Sterk, Peter, Stombaugh, Jesse, Weinberg, Zasha, Wendel, Doug, Leontis, Neocles B., Zirbel, Craig, Knight, Rob, Laederach, Alain
Publicado 2011

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

por Kalvari, Ioanna, Nawrocki, Eric P, Ontiveros-Palacios, Nancy, Argasinska, Joanna, Lamkiewicz, Kevin, Marz, Manja, Griffiths-Jones, Sam, Toffano-Nioche, Claire, Gautheret, Daniel, Weinberg, Zasha, Rivas, Elena, Eddy, Sean R, Finn, Robert D, Bateman, Alex, Petrov, Anton I
Publicado 2020

R2DT is a framework for predicting and visualising RNA secondary structure using templates

por Sweeney, Blake A., Hoksza, David, Nawrocki, Eric P., Ribas, Carlos Eduardo, Madeira, Fábio, Cannone, Jamie J., Gutell, Robin, Maddala, Aparna, Meade, Caeden D., Williams, Loren Dean, Petrov, Anton S., Chan, Patricia P., Lowe, Todd M., Finn, Robert D., Petrov, Anton I.
Publicado 2021