On the middle ground between open source and commercial software - the case of the Newbler program

por Nederbragt, Alexander J
Publicado 2014

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

por Khelik, Ksenia, Sandve, Geir Kjetil, Nederbragt, Alexander Johan, Rognes, Torbjørn
Publicado 2020

Ten quick tips for teaching with participatory live coding

por Nederbragt, Alexander, Harris, Rayna Michelle, Hill, Alison Presmanes, Wilson, Greg
Publicado 2020

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods

por Grytten, Ivar, Rand, Knut D., Nederbragt, Alexander J., Sandve, Geir K.
Publicado 2020

A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain

por Rounge, Trine B, Rohrlack, Thomas, Nederbragt, Alexander J, Kristensen, Tom, Jakobsen, Kjetill S
Publicado 2009

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons

por Siddiqui, Huma, Nederbragt, Alexander J, Lagesen, Karin, Jeansson, Stig L, Jakobsen, Kjetill S
Publicado 2011

Alterations of microbiota in urine from women with interstitial cystitis

por Siddiqui, Huma, Lagesen, Karin, Nederbragt, Alexander J, Jeansson, Stig L, Jakobsen, Kjetill S
Publicado 2012

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences

por Khelik, Ksenia, Lagesen, Karin, Sandve, Geir Kjetil, Rognes, Torbjørn, Nederbragt, Alexander Johan
Publicado 2017

Genomic characterization of the Atlantic cod sex-locus

por Star, Bastiaan, Tørresen, Ole K., Nederbragt, Alexander J., Jakobsen, Kjetill S., Pampoulie, Christophe, Jentoft, Sissel
Publicado 2016

Teleost genomic repeat landscapes in light of diversification rates and ecology

por Reinar, William B., Tørresen, Ole K., Nederbragt, Alexander J., Matschiner, Michael, Jentoft, Sissel, Jakobsen, Kjetill S.
Publicado 2023

Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report

por Siddiqui, Huma, Lagesen, Karin, Nederbragt, Alexander J, Eri, Lars M, Jeansson, Stig L, Jakobsen, Kjetill S
Publicado 2014

Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clus...

por Wetten, Ola F, Nederbragt, Alexander J, Wilson, Robert C, Jakobsen, Kjetill S, Edvardsen, Rolf B, Andersen, Øivind
Publicado 2010

Coordinates and intervals in graph-based reference genomes

por Rand, Knut D., Grytten, Ivar, Nederbragt, Alexander J., Storvik, Geir O., Glad, Ingrid K., Sandve, Geir K.
Publicado 2017

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes

por Grytten, Ivar, Rand, Knut D., Nederbragt, Alexander J., Storvik, Geir O., Glad, Ingrid K., Sandve, Geir K.
Publicado 2019

Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions

por Solbakken, Monica H., Tørresen, Ole K., Nederbragt, Alexander J., Seppola, Marit, Gregers, Tone F., Jakobsen, Kjetill S., Jentoft, Sissel
Publicado 2016

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach func...

por Lie, Kai K., Tørresen, Ole K., Solbakken, Monica Hongrø, Rønnestad, Ivar, Tooming-Klunderud, Ave, Nederbragt, Alexander J., Jentoft, Sissel, Sæle, Øystein
Publicado 2018

A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome

por Varadharajan, Srinidhi, Rastas, Pasi, Löytynoja, Ari, Matschiner, Michael, Calboli, Federico C F, Guo, Baocheng, Nederbragt, Alexander J, Jakobsen, Kjetill S, Merilä, Juha
Publicado 2019

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates

por Espelund, Mari, Minge, Marianne A., Gabrielsen, Tove M., Nederbragt, Alexander J., Shalchian-Tabrizi, Kamran, Otis, Christian, Turmel, Monique, Lemieux, Claude, Jakobsen, Kjetill S.
Publicado 2012

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats

por Tørresen, Ole K., Brieuc, Marine S. O., Solbakken, Monica H., Sørhus, Elin, Nederbragt, Alexander J., Jakobsen, Kjetill S., Meier, Sonnich, Edvardsen, Rolf B., Jentoft, Sissel
Publicado 2018

The genomic mosaicism of hybrid speciation

por Elgvin, Tore O., Trier, Cassandra N., Tørresen, Ole K., Hagen, Ingerid J., Lien, Sigbjørn, Nederbragt, Alexander J., Ravinet, Mark, Jensen, Henrik, Sætre, Glenn-Peter
Publicado 2017