Evolution of TERT-interacting lncRNAs: expanding the regulatory landscape of telomerase

por Nelson, Andrew D. L., Shippen, Dorothy E.
Publicado 2015

A Transposable Element within the Non-canonical Telomerase RNA of Arabidopsis thaliana Modulates Telomerase in Response to DNA Damage

por Xu, Hengyi, Nelson, Andrew D. L., Shippen, Dorothy E.
Publicado 2015

Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp.

por Castillo, Andreina I, Nelson, Andrew D L, Lyons, Eric
Publicado 2019

Biased Gene Retention in the Face of Introgression Obscures Species Relationships

por Forsythe, Evan S, Nelson, Andrew D L, Beilstein, Mark A
Publicado 2020

A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model

por Castillo, Andreina I, Nelson, Andrew D L, Haug-Baltzell, Asher K, Lyons, Eric
Publicado 2018

EPIC-CoGe: managing and analyzing genomic data

por Nelson, Andrew D L, Haug-Baltzell, Asher K, Davey, Sean, Gregory, Brian D, Lyons, Eric
Publicado 2018

Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs

por Palos, Kyle, Yu, Li’ang, Railey, Caylyn E, Nelson Dittrich, Anna C, Nelson, Andrew D L
Publicado 2023

Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs

por Nelson, Andrew D. L., Devisetty, Upendra K., Palos, Kyle, Haug-Baltzell, Asher K., Lyons, Eric, Beilstein, Mark A.
Publicado 2017

Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response

por Chodasiewicz, Monika, Sokolowska, Ewelina Maria, Nelson-Dittrich, Anna C., Masiuk, Aleksandra, Beltran, Juan Camilo Moreno, Nelson, Andrew D. L., Skirycz, Aleksandra
Publicado 2020

Evolution of plant telomerase RNAs: farther to the past, deeper to the roots

por Fajkus, Petr, Kilar, Agata, Nelson, Andrew D L, Holá, Marcela, Peška, Vratislav, Goffová, Ivana, Fojtová, Miloslava, Zachová, Dagmar, Fulnečková, Jana, Fajkus, Jiří
Publicado 2021

Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought

por Nelson, Andrew D. L., Ponciano, Grisel, McMahan, Colleen, Ilut, Daniel C., Pugh, N. Ace, Elshikha, Diaa Eldin, Hunsaker, Douglas J., Pauli, Duke
Publicado 2019

2′,3′-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana

por Chodasiewicz, Monika, Kerber, Olga, Gorka, Michal, Moreno, Juan C, Maruri-Lopez, Israel, Minen, Romina I, Sampathkumar, Arun, Nelson, Andrew D L, Skirycz, Aleksandra
Publicado 2022

A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, lncCOBRA1, Affects Arabidopsis Germination and Development

por Kramer, Marianne C., Kim, Hee Jong, Palos, Kyle R., Garcia, Benjamin A., Lyons, Eric, Beilstein, Mark A., Nelson, Andrew D. L., Gregory, Brian D.
Publicado 2022

N(6)‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis

por Kramer, Marianne C., Janssen, Kevin A., Palos, Kyle, Nelson, Andrew D. L., Vandivier, Lee E., Garcia, Benjamin A., Lyons, Eric, Beilstein, Mark A., Gregory, Brian D.
Publicado 2020

Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis

por Fajkus, Petr, Adámik, Matej, Nelson, Andrew D L, Kilar, Agata M, Franek, Michal, Bubeník, Michal, Frydrychová, Radmila Čapková, Votavová, Alena, Sýkorová, Eva, Fajkus, Jiří, Peška, Vratislav
Publicado 2022

A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants

por Nelson, Andrew D. L., Forsythe, Evan S., Devisetty, Upendra K., Clausen, David S., Haug-Batzell, Asher K., Meldrum, Ari M. R., Frank, Michael R., Lyons, Eric, Beilstein, Mark A.
Publicado 2016

Single-Cell Telomere-Length Quantification Couples Telomere Length to Meristem Activity and Stem Cell Development in Arabidopsis

por González-García, Mary-Paz, Pavelescu, Irina, Canela, Andrés, Sevillano, Xavier, Leehy, Katherine A., Nelson, Andrew D.L., Ibañes, Marta, Shippen, Dorothy E., Blasco, Maria A., Caño-Delgado, Ana I.
Publicado 2015

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data

por Peri, Sateesh, Roberts, Sarah, Kreko, Isabella R., McHan, Lauren B., Naron, Alexandra, Ram, Archana, Murphy, Rebecca L., Lyons, Eric, Gregory, Brian D., Devisetty, Upendra K., Nelson, Andrew D. L.
Publicado 2020

Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

por Palos, Kyle, Nelson Dittrich, Anna C, Yu, Li’ang, Brock, Jordan R, Railey, Caylyn E, Wu, Hsin-Yen Larry, Sokolowska, Ewelina, Skirycz, Aleksandra, Hsu, Polly Yingshan, Gregory, Brian D, Lyons, Eric, Beilstein, Mark A, Nelson, Andrew D L
Publicado 2022

Origin and evolution of the octoploid strawberry genome

por Edger, Patrick P., Poorten, Thomas J., VanBuren, Robert, Hardigan, Michael A., Colle, Marivi, McKain, Michael R., Smith, Ronald D., Teresi, Scott J., Nelson, Andrew D. L., Wai, Ching Man, Alger, Elizabeth I., Bird, Kevin A., Yocca, Alan E., Pumplin, Nathan, Ou, Shujun, Ben-Zvi, Gil, Brodt, Avital, Baruch, Kobi, Swale, Thomas, Shiue, Lily, Acharya, Charlotte B., Cole, Glenn S., Mower, Jeffrey P., Childs, Kevin L., Jiang, Ning, Lyons, Eric, Freeling, Michael, Puzey, Joshua R., Knapp, Steven J.
Publicado 2019