Development of a computational strategy to compare repetitive element enrichment between experimental conditions from high-throughput sequencing datasets

por Criscione, Steven, Neretti, Nicola
Publicado 2012

The functional impact of nuclear reorganization in cellular senescence

por Rocha, Azucena, Dalgarno, Audrey, Neretti, Nicola
Publicado 2021

Single-cell transcriptomics of peripheral blood in the aging mouse

por Teo, Yee Voan, Hinthorn, Samuel J., Webb, Ashley E., Neretti, Nicola
Publicado 2023

New comparative genomics approach reveals a conserved health span signature across species

por Antosh, Michael, Fox, David, Helfand, Stephen L., Cooper, Leon N, Neretti, Nicola
Publicado 2011

Transcriptional landscape of repetitive elements in normal and cancer human cells

por Criscione, Steven W, Zhang, Yue, Thompson, William, Sedivy, John M, Neretti, Nicola
Publicado 2014

GINOM: A statistical framework for assessing interval overlap of multiple genomic features

por Bryner, Darshan, Criscione, Stephen, Leith, Andrew, Huynh, Quyen, Huffer, Fred, Neretti, Nicola
Publicado 2017

Bayesian Estimation of Three-Dimensional Chromosomal Structure from Single-Cell Hi-C Data

por Rosenthal, Michael, Bryner, Darshan, Huffer, Fred, Evans, Shane, Srivastava, Anuj, Neretti, Nicola
Publicado 2019

Regulation of Cellular Senescence by Polycomb Chromatin Modifiers through Distinct DNA Damage-and Histone Methylation-Dependent Pathways

por Ito, Takahiro, Teo, Yee Voan, Evans, Shane A., Neretti, Nicola, Sedivy, John M.
Publicado 2018

Dietary switch reveals fast coordinated gene expression changes in Drosophila melanogaster

por Whitaker, Rachel, Gil, M. Pilar, Ding, Feifei, Tatar, Marc, Helfand, Stephen L., Neretti, Nicola
Publicado 2014

Comparative transcriptional profiling identifies takeout as a gene that regulates life span

por Bauer, Johannes, Antosh, Michael, Chang, Chengyi, Schorl, Christoph, Kolli, Santharam, Neretti, Nicola, Helfand, Stephen L.
Publicado 2010

Dietary and genetic effects on age-related loss of gene silencing reveal epigenetic plasticity of chromatin repression during aging

por Jiang, Nan, Du, Guyu, Tobias, Ethan, Wood, Jason G., Whitaker, Rachel, Neretti, Nicola, Helfand, Stephen L.
Publicado 2013

Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues

por De Cecco, Marco, Criscione, Steven W., Peterson, Abigail L., Neretti, Nicola, Sedivy, John M., Kreiling, Jill A.
Publicado 2013

Genome-wide characterization of human L1 antisense promoter-driven transcripts

por Criscione, Steven W., Theodosakis, Nicholas, Micevic, Goran, Cornish, Toby C., Burns, Kathleen H., Neretti, Nicola, Rodić, Nemanja
Publicado 2016

Cell‐free DNA as a biomarker of aging

por Teo, Yee Voan, Capri, Miriam, Morsiani, Cristina, Pizza, Grazia, Faria, Ana Maria Caetano, Franceschi, Claudio, Neretti, Nicola
Publicado 2018

Reconstructing networks of pathways via significance analysis of their intersections

por Francesconi, Mirko, Remondini, Daniel, Neretti, Nicola, Sedivy, John M, Cooper, Leon N, Verondini, Ettore, Milanesi, Luciano, Castellani, Gastone
Publicado 2008

Reorganization of chromosome architecture in replicative cellular senescence

por Criscione, Steven W., De Cecco, Marco, Siranosian, Benjamin, Zhang, Yue, Kreiling, Jill A., Sedivy, John M., Neretti, Nicola
Publicado 2016

Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation

por Neretti, Nicola, Remondini, Daniel, Tatar, Marc, Sedivy, John M, Pierini, Michela, Mazzatti, Dawn, Powell, Jonathan, Franceschi, Claudio, Castellani, Gastrone C
Publicado 2007

Exon expression profiling reveals stimulus-mediated exon use in neural cells

por McKee, Adrienne E, Neretti, Nicola, Carvalho, Luis E, Meyer, Clifford A, Fox, Edward A, Brodsky, Alexander S, Silver, Pamela A
Publicado 2007

Regulation of Gene Expression in Hepatic Cells by the Mammalian Target of Rapamycin (mTOR)

por Jimenez, Rosa H., Lee, Ju-Seog, Francesconi, Mirko, Castellani, Gastone, Neretti, Nicola, Sanders, Jennifer A., Sedivy, John, Gruppuso, Philip A.
Publicado 2010

Global Regulation of Nucleotide Biosynthetic Genes by c-Myc

por Liu, Yen-Chun, Li, Feng, Handler, Jesse, Huang, Cheng Ran Lisa, Xiang, Yan, Neretti, Nicola, Sedivy, John M., Zeller, Karen I., Dang, Chi V.
Publicado 2008