UBASH3A Interacts with PTPN22 to Regulate IL2 Expression and Risk for Type 1 Diabetes

por Newman, Jeremy R. B., Concannon, Patrick, Ge, Yan
Publicado 2023

RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells

por Akin, Debra, Newman, Jeremy R.B., McIntyre, Lauren M., Sugrue, Stephen P.
Publicado 2016

Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data

por Newman, Jeremy R. B., Concannon, Patrick, Tardaguila, Manuel, Conesa, Ana, McIntyre, Lauren M.
Publicado 2018

Variable selection in omics data: A practical evaluation of small sample sizes

por Kirpich, Alexander, Ainsworth, Elizabeth A., Wedow, Jessica M., Newman, Jeremy R. B., Michailidis, George, McIntyre, Lauren M.
Publicado 2018

Comprehensive Assessment of Genetic Sequence Variants in the Antioxidant ‘Master Regulator’ Nrf2 in Idiopathic Parkinson’s Disease

por Todorovic, Michael, Newman, Jeremy R. B., Shan, Jianguo, Bentley, Steven, Wood, Stephen A., Silburn, Peter A., Mellick, George D.
Publicado 2015

Analysis of Gene Expression Variance in Schizophrenia Using Structural Equation Modeling

por Igolkina, Anna A., Armoskus, Chris, Newman, Jeremy R. B., Evgrafov, Oleg V., McIntyre, Lauren M., Nuzhdin, Sergey V., Samsonova, Maria G.
Publicado 2018

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes

por Newman, Jeremy R.B., Conesa, Ana, Mika, Matthew, New, Felicia N., Onengut-Gumuscu, Suna, Atkinson, Mark A., Rich, Stephen S., McIntyre, Lauren M., Concannon, Patrick
Publicado 2017

Shifts in isoform usage underlie transcriptional differences in regulatory T cells in type 1 diabetes

por Newman, Jeremy R. B., Long, S. Alice, Speake, Cate, Greenbaum, Carla J., Cerosaletti, Karen, Rich, Stephen S., Onengut-Gumuscu, Suna, McIntyre, Lauren M., Buckner, Jane H., Concannon, Patrick
Publicado 2023

Sex-Biased Expression Is Associated With Chromatin State in Drosophila melanogaster and Drosophila simulans

por Nanni, Adalena V, Martinez, Natalie, Graze, Rita, Morse, Alison, Newman, Jeremy R B, Jain, Vaibhav, Vlaho, Srna, Signor, Sarah, Nuzhdin, Sergey V, Renne, Rolf, McIntyre, Lauren M
Publicado 2023

Sex-biased expression is associated with chromatin state in D. melanogaster and D. simulans

por Nanni, Adalena V., Martinez, Natalie, Graze, Rita, Morse, Alison, Newman, Jeremy R. B., Jain, Vaibhav, Vlaho, Srna, Signor, Sarah, Nuzhdin, Sergey V., Renne, Rolf, McIntyre, Lauren M.
Publicado 2023

Testcrosses are an efficient strategy for identifying cis-regulatory variation: Bayesian analysis of allele-specific expression (BayesASE)

por Miller, Brecca R, Morse, Alison M, Borgert, Jacqueline E, Liu, Zihao, Sinclair, Kelsey, Gamble, Gavin, Zou, Fei, Newman, Jeremy R B, León-Novelo, Luis G, Marroni, Fabio, McIntyre, Lauren M
Publicado 2021

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

por de la Fuente, Lorena, Arzalluz-Luque, Ángeles, Tardáguila, Manuel, del Risco, Héctor, Martí, Cristina, Tarazona, Sonia, Salguero, Pedro, Scott, Raymond, Lerma, Alberto, Alastrue-Agudo, Ana, Bonilla, Pablo, Newman, Jeremy R. B., Kosugi, Shunichi, McIntyre, Lauren M., Moreno-Manzano, Victoria, Conesa, Ana
Publicado 2020