Picky Comprehensively Detects High Resolution Structural Variants in Nanopore Long Reads

por Gong, Liang, Wong, Chee-Hong, Cheng, Wei-Chung, Tjong, Harianto, Menghi, Francesca, Ngan, Chew Yee, Liu, Edison T., Wei, Chia-Lin
Publicado 2018

FOS Rescues Neuronal Differentiation of Sox2-Deleted Neural Stem Cells by Genome-Wide Regulation of Common SOX2 and AP1(FOS-JUN) Target Genes

por Pagin, Miriam, Pernebrink, Mattias, Pitasi, Mattia, Malighetti, Federica, Ngan, Chew-Yee, Ottolenghi, Sergio, Pavesi, Giulio, Cantù, Claudio, Nicolis, Silvia K.
Publicado 2021

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

por Bowers, Robert M., Clum, Alicia, Tice, Hope, Lim, Joanne, Singh, Kanwar, Ciobanu, Doina, Ngan, Chew Yee, Cheng, Jan-Fang, Tringe, Susannah G., Woyke, Tanja
Publicado 2015

ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs

por Chai, Haoxi, Tjong, Harianto, Li, Peng, Liao, Wei, Wang, Ping, Wong, Chee Hong, Ngan, Chew Yee, Leonard, Warren J., Wei, Chia-Lin, Ruan, Yijun
Publicado 2023

Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

por Zhang, Xiao-Li, Wu, Jun, Wang, Jian, Shen, Tingting, Li, Hua, Lu, Jun, Gu, Yunzhao, Kang, Yani, Wong, Chee-Hong, Ngan, Chew Yee, Shao, Zhifeng, Wu, Ji, Zhao, Xiaodong
Publicado 2016

An allelic series of spontaneous Rorb mutant mice exhibit a gait phenotype, changes in retina morphology and behavior, and gene expression signatures associated with the unfolded p...

por Murray, George C, Bubier, Jason A, Zinder, Oraya J, Harris, Belinda, Clark, James, Christopher, Mia-Cara, Hanley, Courtany, Tjong, Harianto, Li, Meihong, Ngan, Chew Yee, Reinholdt, Laura, Burgess, Robert W, Tadenev, Abigail L D
Publicado 2023

Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection

por Wong, Chee Hong, Ngan, Chew Yee, Goldfeder, Rachel L., Idol, Jennifer, Kuhlberg, Chris, Maurya, Rahul, Kelly, Kevin, Omerza, Gregory, Renzette, Nicholas, De Abreu, Francine, Li, Lei, Browne, Frederick A., Liu, Edison T., Wei, Chia-Lin
Publicado 2021

Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

por Boden, Rich, Hutt, Lee P., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, Tatiparthi, Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Woyke, Tanja, Kyrpides, Nikos
Publicado 2016

Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134(T), a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

por Boden, Rich, Hutt, Lee P., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, Tatiparthi, Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Woyke, Tanja, Kyrpides, Nikos
Publicado 2016

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

por Gostinčar, Cene, Ohm, Robin A, Kogej, Tina, Sonjak, Silva, Turk, Martina, Zajc, Janja, Zalar, Polona, Grube, Martin, Sun, Hui, Han, James, Sharma, Aditi, Chiniquy, Jennifer, Ngan, Chew Yee, Lipzen, Anna, Barry, Kerrie, Grigoriev, Igor V, Gunde-Cimerman, Nina
Publicado 2014

DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor

por Turco, Gina M., Kajala, Kaisa, Kunde‐Ramamoorthy, Govindarajan, Ngan, Chew‐Yee, Olson, Andrew, Deshphande, Shweta, Tolkunov, Denis, Waring, Barbara, Stelpflug, Scott, Klein, Patricia, Schmutz, Jeremy, Kaeppler, Shawn, Ware, Doreen, Wei, Chia‐Lin, Etchells, J. Peter, Brady, Siobhan M.
Publicado 2017

Chromatin Interaction Analyses Elucidate PRC2-bound Silencers’ Roles in Mouse Development

por Ngan, Chew Yee, Wong, Chee Hong, Tjong, Harianto, Wang, Wenbo, Goldfeder, Rachel L., Choi, Cindy, He, Hao, Gong, Liang, Lin, Junyan, Urban, Barbara, Chow, Julianna, Li, Meihong, Lim, Joanne, Philip, Vivek, Murray, Stephen A., Wang, Haoyi, Wei, Chia-Lin
Publicado 2020

Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea

por Muraguchi, Hajime, Umezawa, Kiwamu, Niikura, Mai, Yoshida, Makoto, Kozaki, Toshinori, Ishii, Kazuo, Sakai, Kiyota, Shimizu, Motoyuki, Nakahori, Kiyoshi, Sakamoto, Yuichi, Choi, Cindy, Ngan, Chew Yee, Lindquist, Eika, Lipzen, Anna, Tritt, Andrew, Haridas, Sajeet, Barry, Kerrie, Grigoriev, Igor V., Pukkila, Patricia J.
Publicado 2015

Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Vargese, Neha, Kyrpides, Nikos C., Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Mukherjee, Supratim, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Woyke, Tanja
Publicado 2017

Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Vargese, Neha, Kyrpides, Nikos C., Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Mukherjee, Supratim, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Woyke, Tanja
Publicado 2017

Absence of genome reduction in diverse, facultative endohyphal bacteria

por Baltrus, David A., Dougherty, Kevin, Arendt, Kayla R., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Arnold, A. Elizabeth
Publicado 2017

Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., Woyke, Tanja
Publicado 2015

Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., Woyke, Tanja
Publicado 2015

Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., Woyke, Tanja
Publicado 2016

Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum

por Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., Woyke, Tanja
Publicado 2016