HIPPI: highly accurate protein family classification with ensembles of HMMs

por Nguyen, Nam-phuong, Nute, Michael, Mirarab, Siavash, Warnow, Tandy
Publicado 2016

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

por Nguyen, Nam-Phuong, Warnow, Tandy, Pop, Mihai, White, Bryan
Publicado 2016

Ultra-large alignments using phylogeny-aware profiles

por Nguyen, Nam-phuong D., Mirarab, Siavash, Kumar, Keerthana, Warnow, Tandy
Publicado 2015

ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer

por Nguyen, Nam-phuong D, Deshpande, Viraj, Luebeck, Jens, Mischel, Paul S, Bafna, Vineet
Publicado 2018

A protocol to detect human CD4(+) T cell extracellular traps using scanning electron microscopy

por Nguyen, Nam Phuong N., Oparaugo, Nicole Chizara, Ouyang, Kelsey, Agak, George W.
Publicado 2022

Human Regulatory T Cells: Understanding the Role of Tregs in Select Autoimmune Skin Diseases and Post-Transplant Nonmelanoma Skin Cancers

por Oparaugo, Nicole Chizara, Ouyang, Kelsey, Nguyen, Nam Phuong N., Nelson, Amanda M., Agak, George W.
Publicado 2023

Brain Tissue-Derived Extracellular Vesicle Mediated Therapy in the Neonatal Ischemic Brain

por Nguyen, Nam Phuong, Helmbrecht, Hawley, Ye, Ziming, Adebayo, Tolulope, Hashi, Najma, Doan, My-Anh, Nance, Elizabeth
Publicado 2022

Helmet regulation in Vietnam: impact on health, equity and medical impoverishment

por Olson, Zachary, Staples, John A, Mock, Charles, Nguyen, Nam Phuong, Bachani, Abdulgafoor M, Nugent, Rachel, Verguet, Stéphane
Publicado 2016

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

por Deshpande, Viraj, Luebeck, Jens, Nguyen, Nam-Phuong D., Bakhtiari, Mehrdad, Turner, Kristen M., Schwab, Richard, Carter, Hannah, Mischel, Paul S., Bafna, Vineet
Publicado 2019

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice

por Boyd, Bret M., Allen, Julie M., Nguyen, Nam-Phuong, Vachaspati, Pranjal, Quicksall, Zachary S., Warnow, Tandy, Mugisha, Lawrence, Johnson, Kevin P., Reed, David L.
Publicado 2017

Developments in Plant Proteins Production for Meat and Fish Analogues

por Nowacka, Malgorzata, Trusinska, Magdalena, Chraniuk, Paulina, Drudi, Federico, Lukasiewicz, Jakub, Nguyen, Nam Phuong, Przybyszewska, Adrianna, Pobiega, Katarzyna, Tappi, Silvia, Tylewicz, Urszula, Rybak, Katarzyna, Wiktor, Artur
Publicado 2023

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini

por Shapiro, Julie Teresa, Mollerup, Sarah, Jensen, Randi Holm, Olofsson, Jill Katharina, Nguyen, Nam-phuong D., Hansen, Thomas Arn, Vinner, Lasse, Monadjem, Ara, McCleery, Robert A., Hansen, Anders J.
Publicado 2021

Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites

por Boyd, Bret M., Nguyen, Nam-Phuong, Allen, Julie M., Waterhouse, Robert M., Vo, Kyle B., Sweet, Andrew D., Clayton, Dale H., Bush, Sarah E., Shapiro, Michael D., Johnson, Kevin P.
Publicado 2022

Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus

por Catanach, Therese A., Sweet, Andrew D., Nguyen, Nam-phuong D., Peery, Rhiannon M., Debevec, Andrew H., Thomer, Andrea K., Owings, Amanda C., Boyd, Bret M., Katz, Aron D., Soto-Adames, Felipe N., Allen, Julie M.
Publicado 2019

High diversity of picornaviruses in rats from different continents revealed by deep sequencing

por Hansen, Thomas Arn, Mollerup, Sarah, Nguyen, Nam-phuong, White, Nicole E, Coghlan, Megan, Alquezar-Planas, David E, Joshi, Tejal, Jensen, Randi Holm, Fridholm, Helena, Kjartansdóttir, Kristín Rós, Mourier, Tobias, Warnow, Tandy, Belsham, Graham J, Bunce, Michael, Willerslev, Eske, Nielsen, Lars Peter, Vinner, Lasse, Hansen, Anders Johannes
Publicado 2016

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

por Kim, Hoon, Nguyen, Nam-Phuong, Turner, Kristen, Wu, Sihan, Gujar, Amit D., Luebeck, Jens, Liu, Jihe, Deshpande, Viraj, Rajkumar, Utkrisht, Namburi, Sandeep, Amin, Samirkumar B., Yi, Eunhee, Menghi, Francesca, Schulte, Johannes H., Henssen, Anton G., Chang, Howard Y., Beck, Christine, Mischel, Paul S., Bafna, Vineet, Verhaak, Roel G.W.
Publicado 2020

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Koga, Tomoyuki, Chaim, Isaac A., Benitez, Jorge A., Markmiller, Sebastian, Parisian, Alison D., Hevner, Robert F., Turner, Kristen M., Hessenauer, Florian M., D’Antonio, Matteo, Nguyen, Nam-phuong D., Saberi, Shahram, Ma, Jianhui, Miki, Shunichiro, Boyer, Antonia D., Ravits, John, Frazer, Kelly A., Bafna, Vineet, Chen, Clark C., Mischel, Paul S., Yeo, Gene W., Furnari, Frank B.
Publicado 2020

Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Koga, Tomoyuki, Chaim, Isaac A., Benitez, Jorge A., Markmiller, Sebastian, Parisian, Alison D., Hevner, Robert F., Turner, Kristen M., Hessenauer, Florian M., D’Antonio, Matteo, Nguyen, Nam-phuong D., Saberi, Shahram, Ma, Jianhui, Miki, Shunichiro, Boyer, Antonia D., Ravits, John, Frazer, Kelly A., Bafna, Vineet, Chen, Clark C., Mischel, Paul S., Yeo, Gene W., Furnari, Frank B.
Publicado 2020