Ultra-large alignments using phylogeny-aware profiles

por Nguyen, Nam-phuong D., Mirarab, Siavash, Kumar, Keerthana, Warnow, Tandy
Publicado 2015

ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer

por Nguyen, Nam-phuong D, Deshpande, Viraj, Luebeck, Jens, Mischel, Paul S, Bafna, Vineet
Publicado 2018

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

por Deshpande, Viraj, Luebeck, Jens, Nguyen, Nam-Phuong D., Bakhtiari, Mehrdad, Turner, Kristen M., Schwab, Richard, Carter, Hannah, Mischel, Paul S., Bafna, Vineet
Publicado 2019

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini

por Shapiro, Julie Teresa, Mollerup, Sarah, Jensen, Randi Holm, Olofsson, Jill Katharina, Nguyen, Nam-phuong D., Hansen, Thomas Arn, Vinner, Lasse, Monadjem, Ara, McCleery, Robert A., Hansen, Anders J.
Publicado 2021

Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus

por Catanach, Therese A., Sweet, Andrew D., Nguyen, Nam-phuong D., Peery, Rhiannon M., Debevec, Andrew H., Thomer, Andrea K., Owings, Amanda C., Boyd, Bret M., Katz, Aron D., Soto-Adames, Felipe N., Allen, Julie M.
Publicado 2019

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Koga, Tomoyuki, Chaim, Isaac A., Benitez, Jorge A., Markmiller, Sebastian, Parisian, Alison D., Hevner, Robert F., Turner, Kristen M., Hessenauer, Florian M., D’Antonio, Matteo, Nguyen, Nam-phuong D., Saberi, Shahram, Ma, Jianhui, Miki, Shunichiro, Boyer, Antonia D., Ravits, John, Frazer, Kelly A., Bafna, Vineet, Chen, Clark C., Mischel, Paul S., Yeo, Gene W., Furnari, Frank B.
Publicado 2020

Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Koga, Tomoyuki, Chaim, Isaac A., Benitez, Jorge A., Markmiller, Sebastian, Parisian, Alison D., Hevner, Robert F., Turner, Kristen M., Hessenauer, Florian M., D’Antonio, Matteo, Nguyen, Nam-phuong D., Saberi, Shahram, Ma, Jianhui, Miki, Shunichiro, Boyer, Antonia D., Ravits, John, Frazer, Kelly A., Bafna, Vineet, Chen, Clark C., Mischel, Paul S., Yeo, Gene W., Furnari, Frank B.
Publicado 2020