NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

por Nguyen Ba, Alex N, Pogoutse, Anastassia, Provart, Nicholas, Moses, Alan M
Publicado 2009

Modular epistasis and the compensatory evolution of gene deletion mutants

por Rojas Echenique, José I., Kryazhimskiy, Sergey, Nguyen Ba, Alex N., Desai, Michael M.
Publicado 2019

Experimental evolution for niche breadth in bacteriophage T4 highlights the importance of structural genes

por Pham, Jenny Y., Ogbunugafor, C. Brandon, Nguyen Ba, Alex N., Hartl, Daniel L.
Publicado 2019

Dynamics and variability in the pleiotropic effects of adaptation in laboratory budding yeast populations

por Bakerlee, Christopher W, Phillips, Angela M, Nguyen Ba, Alex N, Desai, Michael M
Publicado 2021

Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions

por Khan, Tahsin, Douglas, Gavin M., Patel, Priyenbhai, Nguyen Ba, Alex N., Moses, Alan M.
Publicado 2015

The genetic basis of differential autodiploidization in evolving yeast populations

por Tung, Sudipta, Bakerlee, Christopher W, Phillips, Angela M, Nguyen Ba, Alex N, Desai, Michael M
Publicado 2021

Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments

por Nguyen Ba, Alex N., Strome, Bob, Osman, Selma, Legere, Elizabeth-Ann, Zarin, Taraneh, Moses, Alan M.
Publicado 2017

Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity

por Strome, Bob, Hsu, Ian Shenyen, Li Cheong Man, Mitchell, Zarin, Taraneh, Nguyen Ba, Alex, Moses, Alan M.
Publicado 2018

Proteome-wide signatures of function in highly diverged intrinsically disordered regions

por Zarin, Taraneh, Strome, Bob, Nguyen Ba, Alex N, Alberti, Simon, Forman-Kay, Julie D, Moses, Alan M
Publicado 2019

Barcoded bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast

por Nguyen Ba, Alex N, Lawrence, Katherine R, Rego-Costa, Artur, Gopalakrishnan, Shreyas, Temko, Daniel, Michor, Franziska, Desai, Michael M
Publicado 2022

Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library

por Youn, Ji-Young, Friesen, Helena, Nguyen Ba, Alex N., Liang, Wendy, Messier, Vincent, Cox, Mike J., Moses, Alan M., Andrews, Brenda
Publicado 2017

Microwave-Generated Steam Decontamination of N95 Respirators Utilizing Universally Accessible Materials

por Zulauf, Katelyn E., Green, Alex B., Nguyen Ba, Alex N., Jagdish, Tanush, Reif, Dvir, Seeley, Robert, Dale, Alana, Kirby, James E.
Publicado 2020

Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences

por Nguyen Ba, Alex N., Strome, Bob, Hua, Jun Jie, Desmond, Jonathan, Gagnon-Arsenault, Isabelle, Weiss, Eric L., Landry, Christian R., Moses, Alan M.
Publicado 2014

The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism

por Gógl, Gergő, Schneider, Kyle D., Yeh, Brian J., Alam, Nashida, Nguyen Ba, Alex N., Moses, Alan M., Hetényi, Csaba, Reményi, Attila, Weiss, Eric L.
Publicado 2015

A quantitative literature-curated gold standard for kinase-substrate pairs

por Sharifpoor, Sara, Nguyen Ba, Alex N, Young, Ji-Young, van Dyk, Dewald, Friesen, Helena, Douglas, Alison C, Kurat, Christoph F, Chong, Yolanda T, Founk, Karen, Moses, Alan M, Andrews, Brenda J
Publicado 2011

A quantitative literature-curated gold standard for kinase-substrate pairs

por Sharifpoor, Sara, Nguyen Ba, Alex N, Youn, Ji-Young, van Dyk, Dewald, Friesen, Helena, Douglas, Alison C, Kurat, Christoph F, Chong, Yolanda T, Founk, Karen, Moses, Alan M, Andrews, Brenda J
Publicado 2012

A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes

por Bergström, Anders, Simpson, Jared T., Salinas, Francisco, Barré, Benjamin, Parts, Leopold, Zia, Amin, Nguyen Ba, Alex N., Moses, Alan M., Louis, Edward J., Mustonen, Ville, Warringer, Jonas, Durbin, Richard, Liti, Gianni
Publicado 2014

Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect

por Claussnitzer, Melina, Parikh, Victoria N., Wagner, Alex H., Arbesfeld, Jeremy A., Bult, Carol J., Firth, Helen V., Muffley, Lara A., Nguyen Ba, Alex N., Riehle, Kevin, Roth, Frederick P., Tabet, Daniel, Bolognesi, Benedetta, Glazer, Andrew M., Rubin, Alan F.
Publicado 2023

Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations

por Johnson, Milo S, Gopalakrishnan, Shreyas, Goyal, Juhee, Dillingham, Megan E, Bakerlee, Christopher W, Humphrey, Parris T, Jagdish, Tanush, Jerison, Elizabeth R, Kosheleva, Katya, Lawrence, Katherine R, Min, Jiseon, Moulana, Alief, Phillips, Angela M, Piper, Julia C, Purkanti, Ramya, Rego-Costa, Artur, McDonald, Michael J, Nguyen Ba, Alex N, Desai, Michael M
Publicado 2021

Population genomics of domestic and wild yeasts

por Liti, Gianni, Carter, David M., Moses, Alan M., Warringer, Jonas, Parts, Leopold, James, Stephen A., Davey, Robert P., Roberts, Ian N., Burt, Austin, Koufopanou, Vassiliki, Tsai, Isheng J., Bergman, Casey M., Bensasson, Douda, O'Kelly, Michael J. T., van Oudenaarden, Alexander, Barton, David B. H., Bailes, Elizabeth, Nguyen Ba, Alex N., Jones, Matthew, Quail, Michael A., Goodhead, Ian, Sims, Sarah, Smith, Frances, Blomberg, Anders, Durbin, Richard, Louis, Edward J.
Publicado 2009