Deciphering epigenomic code for cell differentiation using deep learning

por Ni, Pengyu, Su, Zhengchang
Publicado 2019

Accurate prediction of cis-regulatory modules reveals a prevalent regulatory genome of humans

por Ni, Pengyu, Su, Zhengchang
Publicado 2021

PCRMS: a database of predicted cis-regulatory modules and constituent transcription factor binding sites in genomes

por Ni, Pengyu, Su, Zhengchang
Publicado 2022

Underlying causes for prevalent false positives and false negatives in STARR-seq data

por Ni, Pengyu, Wu, Siwen, Su, Zhengchang
Publicado 2023

Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice

por Ni, Pengyu, Moe, Joshua, Su, Zhengchang
Publicado 2022

A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome

por Ni, Pengyu, Wilson, David, Su, Zhengchang
Publicado 2022

Towards a map of cis-regulatory sequences in the human genome

por Niu, Meng, Tabari, Ehsan, Ni, Pengyu, Su, Zhengchang
Publicado 2018

Influence of Resting Venous Blood Volume Fraction on Dynamic Causal Modeling and System Identifiability

por Hu, Zhenghui, Ni, Pengyu, Wan, Qun, Zhang, Yan, Shi, Pengcheng, Lin, Qiang
Publicado 2016

GENCODE: reference annotation for the human and mouse genomes in 2023

por Frankish, Adam, Carbonell-Sala, Sílvia, Diekhans, Mark, Jungreis, Irwin, Loveland, Jane E, Mudge, Jonathan M, Sisu, Cristina, Wright, James C, Arnan, Carme, Barnes, If, Banerjee, Abhimanyu, Bennett, Ruth, Berry, Andrew, Bignell, Alexandra, Boix, Carles, Calvet, Ferriol, Cerdán-Vélez, Daniel, Cunningham, Fiona, Davidson, Claire, Donaldson, Sarah, Dursun, Cagatay, Fatima, Reham, Giorgetti, Stefano, Giron, Carlos Garcıa, Gonzalez, Jose Manuel, Hardy, Matthew, Harrison, Peter W, Hourlier, Thibaut, Hollis, Zoe, Hunt, Toby, James, Benjamin, Jiang, Yunzhe, Johnson, Rory, Kay, Mike, Lagarde, Julien, Martin, Fergal J, Gómez, Laura Martínez, Nair, Surag, Ni, Pengyu, Pozo, Fernando, Ramalingam, Vivek, Ruffier, Magali, Schmitt, Bianca M, Schreiber, Jacob M, Steed, Emily, Suner, Marie-Marthe, Sumathipala, Dulika, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Wass, Elizabeth, Yang, Yucheng T, Yates, Andrew, Zafrulla, Zahoor, Choudhary, Jyoti S, Gerstein, Mark, Guigo, Roderic, Hubbard, Tim J P, Kellis, Manolis, Kundaje, Anshul, Paten, Benedict, Tress, Michael L, Flicek, Paul
Publicado 2022