Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)

por Munarko, Yuda, Rampadarath, Anand, Nickerson, David
Publicado 2023

Comment on IWGDF ulcer prevention guidelines

por Nickerson, David Scott, Barrett, Stephen L.
Publicado 2020

Climatic Variability Leads to Later Seasonal Flowering of Floridian Plants

por Von Holle, Betsy, Wei, Yun, Nickerson, David
Publicado 2010

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities

por Munarko, Yuda, Rampadarath, Anand, Nickerson, David P.
Publicado 2023

A data-driven approach to quality risk management

por Alemayehu, Demissie, Alvir, Jose, Levenstein, Marcia, Nickerson, David
Publicado 2013

The influence of warming and biotic interactions on the potential for range expansion of native and nonnative species

por von Holle, Betsy, Weber, Sören E, Nickerson, David M
Publicado 2020

A modular and reusable model of epithelial transport in the proximal convoluted tubule

por Noroozbabaee, Leyla, Blanco, Pablo J., Safaei, Soroush, Nickerson, David P.
Publicado 2022

Computational Modeling of Glucose Uptake in the Enterocyte

por Afshar, Nima, Safaei, Soroush, Nickerson, David P., Hunter, Peter J., Suresh, Vinod
Publicado 2019

Computational Modelling of Glucose Uptake by SGLT1 and Apical GLUT2 in the Enterocyte

por Afshar, Nima, Safaei, Soroush, Nickerson, David P., Hunter, Peter J., Suresh, Vinod
Publicado 2021

A semantics, energy-based approach to automate biomodel composition

por Shahidi, Niloofar, Pan, Michael, Tran, Kenneth, Crampin, Edmund J., Nickerson, David P.
Publicado 2022

Improving reproducibility in computational biology research

por Papin, Jason A., Mac Gabhann, Feilim, Sauro, Herbert M., Nickerson, David, Rampadarath, Anand
Publicado 2020

Open modeling and exchange (OMEX) metadata specification version 1.0

por Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Publicado 2020

Hierarchical semantic composition of biosimulation models using bond graphs

por Shahidi, Niloofar, Pan, Michael, Safaei, Soroush, Tran, Kenneth, Crampin, Edmund J., Nickerson, David P.
Publicado 2021

A novel modular modeling approach for understanding different electromechanics between left and right heart in rat

por Kim, Nari, Pronto, Julius D., Nickerson, David P., Taberner, Andrew J., Hunter, Peter J.
Publicado 2022

OMEX metadata specification (version 1.2)

por Gennari, John H., König, Matthias, Misirli, Goksel, Neal, Maxwell L., Nickerson, David P., Waltemath, Dagmar
Publicado 2021

Insights From Computational Modeling Into the Contribution of Mechano-Calcium Feedback on the Cardiac End-Systolic Force-Length Relationship

por Guidry, Megan E., Nickerson, David P., Crampin, Edmund J., Nash, Martyn P., Loiselle, Denis S., Tran, Kenneth
Publicado 2020

Using CellML with OpenCMISS to Simulate Multi-Scale Physiology

por Nickerson, David P., Ladd, David, Hussan, Jagir R., Safaei, Soroush, Suresh, Vinod, Hunter, Peter J., Bradley, Christopher P.
Publicado 2015

NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories

por Munarko, Yuda, Sarwar, Dewan M., Rampadarath, Anand, Atalag, Koray, Gennari, John H., Neal, Maxwell L., Nickerson, David P.
Publicado 2022

CellML 2.0.1

por Clerx, Michael, Cooling, Michael T., Cooper, Jonathan, Garny, Alan, Moyle, Keri, Nickerson, David P., Nielsen, Poul M. F., Sorby, Hugh
Publicado 2023

CellML 2.0

por Clerx, Michael, Cooling, Michael T., Cooper, Jonathan, Garny, Alan, Moyle, Keri, Nickerson, David P., Nielsen, Poul M. F., Sorby, Hugh
Publicado 2020