miRNA activity inferred from single cell mRNA expression

por Nielsen, Morten Muhlig, Pedersen, Jakob Skou
Publicado 2021

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

por Nielsen, Morten Muhlig, Tataru, Paula, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2018

The landscape and driver potential of site-specific hotspots across cancer genomes

por Juul, Randi Istrup, Nielsen, Morten Muhlig, Juul, Malene, Feuerbach, Lars, Pedersen, Jakob Skou
Publicado 2021

Sequence dependencies and mutation rates of localized mutational processes in cancer

por Poulsgaard, Gustav Alexander, Sørensen, Simon Grund, Juul, Randi Istrup, Nielsen, Morten Muhlig, Pedersen, Jakob Skou
Publicado 2023

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

por Bertl, Johanna, Guo, Qianyun, Juul, Malene, Besenbacher, Søren, Nielsen, Morten Muhlig, Hornshøj, Henrik, Pedersen, Jakob Skou, Hobolth, Asger
Publicado 2018

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

por Juul, Malene, Bertl, Johanna, Guo, Qianyun, Nielsen, Morten Muhlig, Świtnicki, Michał, Hornshøj, Henrik, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2017

Identification of expressed and conserved human noncoding RNAs

por Nielsen, Morten Muhlig, Tehler, Disa, Vang, Søren, Sudzina, Frantisek, Hedegaard, Jakob, Nordentoft, Iver, Ørntoft, Torben Falck, Lund, Anders H., Pedersen, Jakob Skou
Publicado 2014

Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types

por Rasmussen, Martin Q., Tindbæk, Gitte, Nielsen, Morten Muhlig, Merrild, Camilla, Steiniche, Torben, Pedersen, Jakob Skou, Moestrup, Søren K., Degn, Søren E., Madsen, Mette
Publicado 2023

Widespread DNA hypomethylation and differential gene expression in Turner syndrome

por Trolle, Christian, Nielsen, Morten Muhlig, Skakkebæk, Anne, Lamy, Philippe, Vang, Søren, Hedegaard, Jakob, Nordentoft, Iver, Ørntoft, Torben Falck, Pedersen, Jakob Skou, Gravholt, Claus Højbjerg
Publicado 2016

Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer

por Okholm, Trine Line Hauge, Nielsen, Morten Muhlig, Hamilton, Mark P., Christensen, Lise-Lotte, Vang, Søren, Hedegaard, Jakob, Hansen, Thomas Birkballe, Kjems, Jørgen, Dyrskjøt, Lars, Pedersen, Jakob Skou
Publicado 2017

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

por Hornshøj, Henrik, Nielsen, Morten Muhlig, Sinnott-Armstrong, Nicholas A., Świtnicki, Michał P., Juul, Malene, Madsen, Tobias, Sallari, Richard, Kellis, Manolis, Ørntoft, Torben, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2018

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome

por Skakkebæk, Anne, Nielsen, Morten Muhlig, Trolle, Christian, Vang, Søren, Hornshøj, Henrik, Hedegaard, Jakob, Wallentin, Mikkel, Bojesen, Anders, Hertz, Jens Michael, Fedder, Jens, Østergaard, John Rosendahl, Pedersen, Jakob Skou, Gravholt, Claus Højbjerg
Publicado 2018

circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA

por Okholm, Trine Line Hauge, Kamstrup, Andreas Bjerregaard, Nielsen, Morten Muhlig, Hollensen, Anne Kruse, Graversgaard, Mette Laugesen, Kristensen, Lasse Sommer, Vang, Søren, Park, Samuel S., Yeo, Gene W., Dyrskjøt, Lars, Kjems, Jørgen, Pedersen, Jakob Skou, Damgaard, Christian Kroun
Publicado 2023

miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

por Rasmussen, Mads Heilskov, Lyskjær, Iben, Jersie-Christensen, Rosa Rakownikow, Tarpgaard, Line Schmidt, Primdal-Bengtson, Bjarke, Nielsen, Morten Muhlig, Pedersen, Jakob Skou, Hansen, Tine Plato, Hansen, Flemming, Olsen, Jesper Velgaard, Pfeiffer, Per, Ørntoft, Torben Falck, Andersen, Claus Lindbjerg
Publicado 2016

Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

por Okholm, Trine Line Hauge, Sathe, Shashank, Park, Samuel S., Kamstrup, Andreas Bjerregaard, Rasmussen, Asta Mannstaedt, Shankar, Archana, Chua, Zong Ming, Fristrup, Niels, Nielsen, Morten Muhlig, Vang, Søren, Dyrskjøt, Lars, Aigner, Stefan, Damgaard, Christian Kroun, Yeo, Gene W., Pedersen, Jakob Skou
Publicado 2020

SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

por Damas, Nkerorema Djodji, Marcatti, Michela, Côme, Christophe, Christensen, Lise Lotte, Nielsen, Morten Muhlig, Baumgartner, Roland, Gylling, Helene Maria, Maglieri, Giulia, Rundsten, Carsten Friis, Seemann, Stefan E., Rapin, Nicolas, Thézenas, Simon, Vang, Søren, Ørntoft, Torben, Andersen, Claus Lindbjerg, Pedersen, Jakob Skou, Lund, Anders H.
Publicado 2016

Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer

por Seitz, Anna Katharina, Christensen, Lise Lotte, Christensen, Emil, Faarkrog, Kasper, Ostenfeld, Marie Stampe, Hedegaard, Jakob, Nordentoft, Iver, Nielsen, Morten Muhlig, Palmfeldt, Johan, Thomson, Michelle, Jensen, Michael Theis Solgaard, Nawroth, Roman, Maurer, Tobias, Ørntoft, Torben Falck, Jensen, Jørgen Bjerggaard, Damgaard, Christian Kroun, Dyrskjøt, Lars
Publicado 2017

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

por Rheinbay, Esther, Nielsen, Morten Muhlig, Abascal, Federico, Wala, Jeremiah A., Shapira, Ofer, Tiao, Grace, Hornshøj, Henrik, Hess, Julian M., Juul, Randi Istrup, Lin, Ziao, Feuerbach, Lars, Sabarinathan, Radhakrishnan, Madsen, Tobias, Kim, Jaegil, Mularoni, Loris, Shuai, Shimin, Lanzós, Andrés, Herrmann, Carl, Maruvka, Yosef E., Shen, Ciyue, Amin, Samirkumar B., Bandopadhayay, Pratiti, Bertl, Johanna, Boroevich, Keith A., Busanovich, John, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Craft, David, Dhingra, Priyanka, Diamanti, Klev, Fonseca, Nuno A., Gonzalez-Perez, Abel, Guo, Qianyun, Hamilton, Mark P., Haradhvala, Nicholas J., Hong, Chen, Isaev, Keren, Johnson, Todd A., Juul, Malene, Kahles, Andre, Kahraman, Abdullah, Kim, Youngwook, Komorowski, Jan, Kumar, Kiran, Kumar, Sushant, Lee, Donghoon, Lehmann, Kjong-Van, Li, Yilong, Liu, Eric Minwei, Lochovsky, Lucas, Park, Keunchil, Pich, Oriol, Roberts, Nicola D., Saksena, Gordon, Schumacher, Steven E., Sidiropoulos, Nikos, Sieverling, Lina, Sinnott-Armstrong, Nasa, Stewart, Chip, Tamborero, David, Tubio, Jose M. C., Umer, Husen M., Uusküla-Reimand, Liis, Wadelius, Claes, Wadi, Lina, Yao, Xiaotong, Zhang, Cheng-Zhong, Zhang, Jing, Haber, James E., Hobolth, Asger, Imielinski, Marcin, Kellis, Manolis, Lawrence, Michael S., von Mering, Christian, Nakagawa, Hidewaki, Raphael, Benjamin J., Rubin, Mark A., Sander, Chris, Stein, Lincoln D., Stuart, Joshua M., Tsunoda, Tatsuhiko, Wheeler, David A., Johnson, Rory, Reimand, Jüri, Gerstein, Mark, Khurana, Ekta, Campbell, Peter J., López-Bigas, Núria, Weischenfeldt, Joachim, Beroukhim, Rameen, Martincorena, Iñigo, Pedersen, Jakob Skou, Getz, Gad
Publicado 2020

Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

por Rheinbay, Esther, Nielsen, Morten Muhlig, Abascal, Federico, Wala, Jeremiah A., Shapira, Ofer, Tiao, Grace, Hornshøj, Henrik, Hess, Julian M., Juul, Randi Istrup, Lin, Ziao, Feuerbach, Lars, Sabarinathan, Radhakrishnan, Madsen, Tobias, Kim, Jaegil, Mularoni, Loris, Shuai, Shimin, Lanzós, Andrés, Herrmann, Carl, Maruvka, Yosef E., Shen, Ciyue, Amin, Samirkumar B., Bandopadhayay, Pratiti, Bertl, Johanna, Boroevich, Keith A., Busanovich, John, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Craft, David, Dhingra, Priyanka, Diamanti, Klev, Fonseca, Nuno A., Gonzalez-Perez, Abel, Guo, Qianyun, Hamilton, Mark P., Haradhvala, Nicholas J., Hong, Chen, Isaev, Keren, Johnson, Todd A., Juul, Malene, Kahles, Andre, Kahraman, Abdullah, Kim, Youngwook, Komorowski, Jan, Kumar, Kiran, Kumar, Sushant, Lee, Donghoon, Lehmann, Kjong-Van, Li, Yilong, Liu, Eric Minwei, Lochovsky, Lucas, Park, Keunchil, Pich, Oriol, Roberts, Nicola D., Saksena, Gordon, Schumacher, Steven E., Sidiropoulos, Nikos, Sieverling, Lina, Sinnott-Armstrong, Nasa, Stewart, Chip, Tamborero, David, Tubio, Jose M. C., Umer, Husen M., Uusküla-Reimand, Liis, Wadelius, Claes, Wadi, Lina, Yao, Xiaotong, Zhang, Cheng-Zhong, Zhang, Jing, Haber, James E., Hobolth, Asger, Imielinski, Marcin, Kellis, Manolis, Lawrence, Michael S., von Mering, Christian, Nakagawa, Hidewaki, Raphael, Benjamin J., Rubin, Mark A., Sander, Chris, Stein, Lincoln D., Stuart, Joshua M., Tsunoda, Tatsuhiko, Wheeler, David A., Johnson, Rory, Reimand, Jüri, Gerstein, Mark, Khurana, Ekta, Campbell, Peter J., López-Bigas, Núria, Weischenfeldt, Joachim, Beroukhim, Rameen, Martincorena, Iñigo, Pedersen, Jakob Skou, Getz, Gad
Publicado 2023