Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization

por Niida, Atsushi, Hasegawa, Takanori, Miyano, Satoru
Publicado 2019

Understanding intratumor heterogeneity by combining genome analysis and mathematical modeling

por Niida, Atsushi, Nagayama, Satoshi, Miyano, Satoru, Mimori, Koshi
Publicado 2018

Cancer evolution and heterogeneity

por Mimori, Koshi, Saito, Tomoko, Niida, Atsushi, Miyano, Satoru
Publicado 2018

Modeling colorectal cancer evolution

por Niida, Atsushi, Mimori, Koshi, Shibata, Tatsuhiro, Miyano, Satoru
Publicado 2021

Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues

por Niida, Atsushi, Imoto, Seiya, Yamaguchi, Rui, Nagasaki, Masao, Miyano, Satoru
Publicado 2010

phyC: Clustering cancer evolutionary trees

por Matsui, Yusuke, Niida, Atsushi, Uchi, Ryutaro, Mimori, Koshi, Miyano, Satoru, Shimamura, Teppei
Publicado 2017

A unified simulation model for understanding the diversity of cancer evolution

por Niida, Atsushi, Hasegawa, Takanori, Innan, Hideki, Shibata, Tatsuhiro, Mimori, Koshi, Miyano, Satoru
Publicado 2020

Gene set-based module discovery in the breast cancer transcriptome

por Niida, Atsushi, Smith, Andrew D, Imoto, Seiya, Aburatani, Hiroyuki, Zhang, Michael Q, Akiyama, Tetsu
Publicado 2009

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells

por Niida, Atsushi, Smith, Andrew D, Imoto, Seiya, Tsutsumi, Shuichi, Aburatani, Hiroyuki, Zhang, Michael Q, Akiyama, Tetsu
Publicado 2008

Possible Role of Cytochrome P450 1B1 in the Mechanism of Gemcitabine Resistance in Pancreatic Cancer

por Yada, Erica, Kasajima, Rika, Niida, Atsushi, Imoto, Seiya, Miyano, Satoru, Miyagi, Yohei, Sasada, Tetsuro, Wada, Satoshi
Publicado 2021

A Novel Network Profiling Analysis Reveals System Changes in Epithelial-Mesenchymal Transition

por Shimamura, Teppei, Imoto, Seiya, Shimada, Yukako, Hosono, Yasuyuki, Niida, Atsushi, Nagasaki, Masao, Yamaguchi, Rui, Takahashi, Takashi, Miyano, Satoru
Publicado 2011

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens

por Hasegawa, Takanori, Hayashi, Shuto, Shimizu, Eigo, Mizuno, Shinichi, Niida, Atsushi, Yamaguchi, Rui, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya
Publicado 2020

The Tumor-Suppressive miR-497-195 Cluster Targets Multiple Cell-Cycle Regulators in Hepatocellular Carcinoma

por Furuta, Mayuko, Kozaki, Ken-ichi, Tanimoto, Kousuke, Tanaka, Shinji, Arii, Shigeki, Shimamura, Teppei, Niida, Atsushi, Miyano, Satoru, Inazawa, Johji
Publicado 2013

Palindromic amplification of the ERBB2 oncogene in primary HER2-positive breast tumors

por Marotta, Michael, Onodera, Taku, Johnson, Jeffrey, Budd, G. Thomas, Watanabe, Takaaki, Cui, Xiaojiang, Giuliano, Armando E., Niida, Atsushi, Tanaka, Hisashi
Publicado 2017

Novel oncogene 5MP1 reprograms c-Myc translation initiation to drive malignant phenotypes in colorectal cancer

por Sato, Kuniaki, Masuda, Takaaki, Hu, Qingjiang, Tobo, Taro, Gillaspie, Sarah, Niida, Atsushi, Thornton, Mackenzie, Kuroda, Yousuke, Eguchi, Hidetoshi, Nakagawa, Takashi, Asano, Katsura, Mimori, Koshi
Publicado 2019

Overexpression of Cohesion Establishment Factor DSCC1 through E2F in Colorectal Cancer

por Yamaguchi, Kiyoshi, Yamaguchi, Rui, Takahashi, Norihiko, Ikenoue, Tsuneo, Fujii, Tomoaki, Shinozaki, Masaru, Tsurita, Giichiro, Hata, Keisuke, Niida, Atsushi, Imoto, Seiya, Miyano, Satoru, Nakamura, Yusuke, Furukawa, Yoichi
Publicado 2014

Serial mutational tracking in surgically resected locally advanced colorectal cancer with neoadjuvant chemotherapy

por Sugimachi, Keishi, Sakimura, Shotaro, Kuramitsu, Shotaro, Hirata, Hidenari, Niida, Atsushi, Iguchi, Tomohiro, Eguchi, Hidetoshi, Masuda, Takaaki, Morita, Masaru, Toh, Yasushi, Maehara, Yoshihiko, Suzuki, Yutaka, Mimori, Koshi
Publicado 2018

A novel cell-cycle-indicator, mVenus-p27K(−), identifies quiescent cells and visualizes G0–G1 transition

por Oki, Toshihiko, Nishimura, Koutarou, Kitaura, Jiro, Togami, Katsuhiro, Maehara, Akie, Izawa, Kumi, Sakaue-Sawano, Asako, Niida, Atsushi, Miyano, Satoru, Aburatani, Hiroyuki, Kiyonari, Hiroshi, Miyawaki, Atsushi, Kitamura, Toshio
Publicado 2014

Genetic landscape of external auditory canal squamous cell carcinoma

por Sato, Kuniaki, Komune, Noritaka, Hongo, Takahiro, Koike, Kensuke, Niida, Atsushi, Uchi, Ryutaro, Noda, Teppei, Kogo, Ryunosuke, Matsumoto, Nozomu, Yamamoto, Hidetaka, Masuda, Muneyuki, Oda, Yoshinao, Mimori, Koshi, Nakagawa, Takashi
Publicado 2020

Cell cycle-dependent gene networks for cell proliferation activated by nuclear CK2α complexes

por Homma, Miwako Kato, Nakato, Ryuichiro, Niida, Atsushi, Bando, Masashige, Fujiki, Katsunori, Yokota, Naoko, Yamamoto, So, Shibata, Takeshi, Takagi, Motoki, Yamaki, Junko, Kozuka-Hata, Hiroko, Oyama, Masaaki, Shirahige, Katsuhiko, Homma, Yoshimi
Publicado 2023