TACO produces robust multi-sample transcriptome assemblies from RNA-seq

por Niknafs, Yashar S., Pandian, Balaji, Iyer, Hariharan K., Chinnaiyan, Arul M., Iyer, Matthew K.
Publicado 2016

The DEK Oncoprotein Functions in Ovarian Cancer Growth and Survival()

por Hacker, Kari E, Bolland, Danielle E, Tan, Lijun, Saha, Anjan K, Niknafs, Yashar S, Markovitz, David M, McLean, Karen
Publicado 2018

MiPanda: A Resource for Analyzing and Visualizing Next-Generation Sequencing Transcriptomics Data

por Niknafs, Yashar S., Pandian, Balaji, Gajjar, Tilak, Gaudette, Zach, Wheelock, Kevin, Maz, Mitra P., Achar, Rohan K., Song, Melinda, Massaro, Cory, Cao, Xuhong, Chinnaiyan, Arul M.
Publicado 2018

MechRNA: prediction of lncRNA mechanisms from RNA–RNA and RNA–protein interactions

por Gawronski, Alexander R, Uhl, Michael, Zhang, Yajia, Lin, Yen-Yi, Niknafs, Yashar S, Ramnarine, Varune R, Malik, Rohit, Feng, Felix, Chinnaiyan, Arul M, Collins, Colin C, Sahinalp, S Cenk, Backofen, Rolf
Publicado 2018

MyProstateScore in men considering repeat biopsy: validation of a simple testing approach

por Tosoian, Jeffrey J., Sessine, Michael S., Trock, Bruce J., Ross, Ashley E., Xie, Cassie, Zheng, Yingye, Samora, Nathan L., Siddiqui, Javed, Niknafs, Yashar, Chopra, Zoey, Tomlins, Scott, Kunju, Lakshmi P., Palapattu, Ganesh S., Morgan, Todd M., Wei, John T., Salami, Simpa S., Chinnaiyan, Arul M.
Publicado 2022

Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer()

por Shukla, Sudhanshu, Zhang, Xiang, Niknafs, Yashar S., Xiao, Lanbo, Mehra, Rohit, Cieślik, Marcin, Ross, Ashley, Schaeffer, Edward, Malik, Bhavna, Guo, Shuling, Freier, Susan M., Bui, Huynh-Hoa, Siddiqui, Javed, Jing, Xiaojun, Cao, Xuhong, Dhanasekaran, Saravana M., Feng, Felix Y., Chinnaiyan, Arul M., Malik, Rohit
Publicado 2016

The role of the histone H3 variant CENPA in prostate cancer

por Saha, Anjan K., Contreras-Galindo, Rafael, Niknafs, Yashar S., Iyer, Matthew, Qin, Tingting, Padmanabhan, Karthik, Siddiqui, Javed, Palande, Monica, Wang, Claire, Qian, Brian, Ward, Elizabeth, Tang, Tara, Tomlins, Scott A., Gitlin, Scott D., Sartor, Maureen A., Omenn, Gilbert S., Chinnaiyan, Arul M., Markovitz, David M.
Publicado 2020

Association of Urinary MyProstateScore, Age, and Prostate Volume in a Longitudinal Cohort of Healthy Men: Long-term Findings from the Olmsted County Study

por Tosoian, Jeffrey J., Dunn, Rodney L., Niknafs, Yashar S., Saha, Anjan, Vince, Randy A., St. Sauver, Jennifer L., Jacobson, Debra J., McGree, Michaela E., Siddiqui, Javed, Groskopf, Jack, Jacobsen, Steven J., Tomlins, Scott A., Kunju, Lakshmi P., Morgan, Todd M., Salami, Simpa S., Wei, John T., Chinnaiyan, Arul M., Sarma, Aruna V.
Publicado 2021

Regulation of heterotopic ossification by monocytes in a mouse model of aberrant wound healing

por Sorkin, Michael, Huber, Amanda K., Hwang, Charles, Carson, William F., Menon, Rajasree, Li, John, Vasquez, Kaetlin, Pagani, Chase, Patel, Nicole, Li, Shuli, Visser, Noelle D., Niknafs, Yashar, Loder, Shawn, Scola, Melissa, Nycz, Dylan, Gallagher, Katherine, McCauley, Laurie K., Xu, Jiajia, James, Aaron W., Agarwal, Shailesh, Kunkel, Stephen, Mishina, Yuji, Levi, Benjamin
Publicado 2020

CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue

por van Riet, Job, Saha, Chinmoy, Strepis, Nikolaos, Brouwer, Rutger W. W., Martens-Uzunova, Elena S., van de Geer, Wesley S., Swagemakers, Sigrid M. A., Stubbs, Andrew, Halimi, Yassir, Voogd, Sanne, Tanmoy, Arif Mohammad, Komor, Malgorzata A., Hoogstrate, Youri, Janssen, Bart, Fijneman, Remond J. A., Niknafs, Yashar S., Chinnaiyan, Arul M., van IJcken, Wilfred F. J., van der Spek, Peter J., Jenster, Guido, Louwen, Rogier
Publicado 2022

Targeting the MLL complex in castration resistant prostate cancer

por Malik, Rohit, Khan, Amjad P., Asangani, Irfan A., Cieślik, Marcin, Prensner, John R., Wang, Xiaoju, Iyer, Matthew K., Jiang, Xia, Borkin, Dmitry, Escara-Wilke, June, Stender, Rachell, Wu, Yi-Mi, Niknafs, Yashar S., Jing, Xiaojun, Qiao, Yuanyuan, Palanisamy, Nallasivam, Kunju, Lakshmi P., Krishnamurthy, Pranathi M., Yocum, Anastasia K., Mellacheruvu, Dattatreya, Nesvizhskii, Alexey I., Cao, Xuhong, Dhanasekaran, Saravana M., Feng, Felix Y., Grembecka, Jolanta, Cierpicki, Tomasz, Chinnaiyan, Arul M.
Publicado 2015

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression

por Niknafs, Yashar S., Han, Sumin, Ma, Teng, Speers, Corey, Zhang, Chao, Wilder-Romans, Kari, Iyer, Matthew K., Pitchiaya, Sethuramasundaram, Malik, Rohit, Hosono, Yasuyuki, Prensner, John R., Poliakov, Anton, Singhal, Udit, Xiao, Lanbo, Kregel, Steven, Siebenaler, Ronald F., Zhao, Shuang G., Uhl, Michael, Gawronski, Alexander, Hayes, Daniel F., Pierce, Lori J., Cao, Xuhong, Collins, Colin, Backofen, Rolf, Sahinalp, Cenk S., Rae, James M., Chinnaiyan, Arul M., Feng, Felix Y.
Publicado 2016

Rapid intraoperative histology of unprocessed surgical specimens via fibre-laser-based stimulated Raman scattering microscopy

por Orringer, Daniel A., Pandian, Balaji, Niknafs, Yashar S., Hollon, Todd C., Boyle, Julianne, Lewis, Spencer, Garrard, Mia, Hervey-Jumper, Shawn L., Garton, Hugh J.L., Maher, Cormac O., Heth, Jason A., Sagher, Oren, Wilkinson, D. Andrew, Snuderl, Matija, Venneti, Sriram, Ramkissoon, Shakti H., McFadden, Kathryn A., Fisher-Hubbard, Amanda, Lieberman, Andrew P., Johnson, Timothy D., Xie, X. Sunney, Trautman, Jay K., Freudiger, Christian W., Camelo-Piragua, Sandra
Publicado 2017

Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression

por Zhang, Yajia, Pitchiaya, Sethuramasundaram, Cieślik, Marcin, Niknafs, Yashar S., Tien, Jean C-Y., Hosono, Yasuyuki, Iyer, Matthew K., Yazdani, Sahr, Subramaniam, Shruthi, Shukla, Sudhanshu K., Jiang, Xia, Wang, Lisha, Liu, Tzu-Ying, Uhl, Michael, Gawronski, Alexander R., Qiao, Yuanyuan, Xiao, Lanbo, Dhanasekaran, Saravana M., Juckette, Kristin M., Kunju, Lakshmi P., Cao, Xuhong, Patel, Utsav, Batish, Mona, Shukla, Girish C., Paulsen, Michelle T., Ljungman, Mats, Jiang, Hui, Mehra, Rohit, Backofen, Rolf, Sahinalp, Cenk S., Freier, Susan M., Watt, Andrew T., Guo, Shuling, Wei, John T., Feng, Felix Y., Malik, Rohit, Chinnaiyan, Arul M.
Publicado 2018