Adversarial and variational autoencoders improve metagenomic binning

por Líndez, Pau Piera, Johansen, Joachim, Kutuzova, Svetlana, Sigurdsson, Arnor Ingi, Nissen, Jakob Nybo, Rasmussen, Simon
Publicado 2023

Impaired Hippocampal Glutamate and Glutamine Metabolism in the db/db Mouse Model of Type 2 Diabetes Mellitus

por Andersen, Jens Velde, Nissen, Jakob Dahl, Christensen, Sofie Kjellerup, Markussen, Kia Hjulmand, Waagepetersen, Helle Sønderby
Publicado 2017

Novel Clade 2.3.4.4b Highly Pathogenic Avian Influenza A H5N8 and H5N5 Viruses in Denmark, 2020

por Liang, Yuan, Nissen, Jakob N., Krog, Jesper S., Breum, Solvej Ø., Trebbien, Ramona, Larsen, Lars E., Hjulsager, Charlotte K.
Publicado 2021

Glutamate Dehydrogenase Is Important for Ammonia Fixation and Amino Acid Homeostasis in Brain During Hyperammonemia

por Voss, Caroline M., Arildsen, Lene, Nissen, Jakob D., Waagepetersen, Helle S., Schousboe, Arne, Maechler, Pierre, Ott, Peter, Vilstrup, Hendrik, Walls, Anne B.
Publicado 2021

Genome binning of viral entities from bulk metagenomics data

por Johansen, Joachim, Plichta, Damian R., Nissen, Jakob Nybo, Jespersen, Marie Louise, Shah, Shiraz A., Deng, Ling, Stokholm, Jakob, Bisgaard, Hans, Nielsen, Dennis Sandris, Sørensen, Søren J., Rasmussen, Simon
Publicado 2022

Severe Human Case of Zoonotic Infection with Swine-Origin Influenza A Virus, Denmark, 2021

por Andersen, Klara M., Vestergaard, Lasse S., Nissen, Jakob N., George, Sophie J., Ryt-Hansen, Pia, Hjulsager, Charlotte K., Krog, Jesper S., Skov, Marianne N., Alexandersen, Søren, Larsen, Lars E., Trebbien, Ramona
Publicado 2022

Reassortant Influenza A(H1N1)pdm09 Virus in Elderly Woman, Denmark, January 2021

por Nissen, Jakob N., George, Sophie J., Hjulsager, Charlotte K., Krog, Jesper S., Nielsen, Xiaohui C., Madsen, Tina V., Andersen, Klara M., Krause, Tyra G., Vestergaard, Lasse S., Larsen, Lars E., Trebbien, Ramona
Publicado 2021

Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance

por Duarte, Ana Sofia Ribeiro, Stärk, Katharina D. C., Munk, Patrick, Leekitcharoenphon, Pimlapas, Bossers, Alex, Luiken, Roosmarijn, Sarrazin, Steven, Lukjancenko, Oksana, Pamp, Sünje Johanna, Bortolaia, Valeria, Nissen, Jakob Nybo, Kirstahler, Philipp, Van Gompel, Liese, Poulsen, Casper Sahl, Kaas, Rolf Sommer, Hellmér, Maria, Hansen, Rasmus Borup, Gomez, Violeta Munoz, Hald, Tine
Publicado 2020

Virological surveillance of influenza viruses in the WHO European Region in 2019/20 – impact of the COVID-19 pandemic

por Melidou, Angeliki, Pereyaslov, Dmitriy, Hungnes, Olav, Prosenc, Katarina, Alm, Erik, Adlhoch, Cornelia, Fielding, James, Sneiderman, Miriam, Martinuka, Oksana, Celentano, Lucia Pastore, Pebody, Richard, Redlberger-Fritz, Monika, Aberle, Judith, Trebbien, Ramona, Nissen, Jakob Nybo, Ikonen, Niina, Haveri, Anu, Dürrwald, Ralf, Gioula, Georgia, Exindari, Maria, Kossyvakis, Athanasios, Mentis, Andreas, Dunford, Linda, Domegan, Lisa, Castrucci, Maria Rita, Puzelli, Simona, Zamjatina, Natalija, Pakarna, Gatis, Griskevičius, Algirdas, Skrickiene, Asta, Fournier, Guillaume, Mossong, Joel, Meijer, Adam, Fouchier, Ron, Bragstad, Karoline, Hungnes, Olav, Guiomar, Raquel, Pechirra, Pedro, Lazar, Mihaela, Maria, Cherciu Carmen, Komissarov, Andrey, Danilenko, Daria, Burtseva, Elena, Tichá, Elena, Staronova, Edita, Prosenc, Katarina, Berginc, Nataša, Pozo, Francisco, Inmaculada Casas, Majadahonda, Brytting, Mia, Gonçalves, Ana Rita, Demchyshyna, Iryna, Lackenby, Angie, Thompson, Catherine, Gunson, Rory N, Shepherd, Samantha J, Moore, Catherine, Cottrell, Simon, Melidou, Angeliki, Adlhoch, Cornelia, Martinuka, Oksana, Penttinen, Pasi, Pastore Celentano, Lucia, Pereyaslov, Dmitriy, Sneiderman, Miriam, Fielding, James, Pebody, Richard, McCauley, John, Daniels, Rodney
Publicado 2020

Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

por Allesøe, Rosa Lundbye, Lundgaard, Agnete Troen, Hernández Medina, Ricardo, Aguayo-Orozco, Alejandro, Johansen, Joachim, Nissen, Jakob Nybo, Brorsson, Caroline, Mazzoni, Gianluca, Niu, Lili, Biel, Jorge Hernansanz, Leal Rodríguez, Cristina, Brasas, Valentas, Webel, Henry, Benros, Michael Eriksen, Pedersen, Anders Gorm, Chmura, Piotr Jaroslaw, Jacobsen, Ulrik Plesner, Mari, Andrea, Koivula, Robert, Mahajan, Anubha, Vinuela, Ana, Tajes, Juan Fernandez, Sharma, Sapna, Haid, Mark, Hong, Mun-Gwan, Musholt, Petra B., De Masi, Federico, Vogt, Josef, Pedersen, Helle Krogh, Gudmundsdottir, Valborg, Jones, Angus, Kennedy, Gwen, Bell, Jimmy, Thomas, E. Louise, Frost, Gary, Thomsen, Henrik, Hansen, Elizaveta, Hansen, Tue Haldor, Vestergaard, Henrik, Muilwijk, Mirthe, Blom, Marieke T., ‘t Hart, Leen M., Pattou, Francois, Raverdy, Violeta, Brage, Soren, Kokkola, Tarja, Heggie, Alison, McEvoy, Donna, Mourby, Miranda, Kaye, Jane, Hattersley, Andrew, McDonald, Timothy, Ridderstråle, Martin, Walker, Mark, Forgie, Ian, Giordano, Giuseppe N., Pavo, Imre, Ruetten, Hartmut, Pedersen, Oluf, Hansen, Torben, Dermitzakis, Emmanouil, Franks, Paul W., Schwenk, Jochen M., Adamski, Jerzy, McCarthy, Mark I., Pearson, Ewan, Banasik, Karina, Rasmussen, Simon, Brunak, Søren
Publicado 2023

Author Correction: Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

por Allesøe, Rosa Lundbye, Lundgaard, Agnete Troen, Hernández Medina, Ricardo, Aguayo-Orozco, Alejandro, Johansen, Joachim, Nissen, Jakob Nybo, Brorsson, Caroline, Mazzoni, Gianluca, Niu, Lili, Biel, Jorge Hernansanz, Leal Rodríguez, Cristina, Brasas, Valentas, Webel, Henry, Benros, Michael Eriksen, Pedersen, Anders Gorm, Chmura, Piotr Jaroslaw, Jacobsen, Ulrik Plesner, Mari, Andrea, Koivula, Robert, Mahajan, Anubha, Vinuela, Ana, Tajes, Juan Fernandez, Sharma, Sapna, Haid, Mark, Hong, Mun-Gwan, Musholt, Petra B., De Masi, Federico, Vogt, Josef, Pedersen, Helle Krogh, Gudmundsdottir, Valborg, Jones, Angus, Kennedy, Gwen, Bell, Jimmy, Thomas, E. Louise, Frost, Gary, Thomsen, Henrik, Hansen, Elizaveta, Hansen, Tue Haldor, Vestergaard, Henrik, Muilwijk, Mirthe, Blom, Marieke T., ‘t Hart, Leen M., Pattou, Francois, Raverdy, Violeta, Brage, Soren, Kokkola, Tarja, Heggie, Alison, McEvoy, Donna, Mourby, Miranda, Kaye, Jane, Hattersley, Andrew, McDonald, Timothy, Ridderstråle, Martin, Walker, Mark, Forgie, Ian, Giordano, Giuseppe N., Pavo, Imre, Ruetten, Hartmut, Pedersen, Oluf, Hansen, Torben, Dermitzakis, Emmanouil, Franks, Paul W., Schwenk, Jochen M., Adamski, Jerzy, McCarthy, Mark I., Pearson, Ewan, Banasik, Karina, Rasmussen, Simon, Brunak, Søren
Publicado 2023

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022