iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE

por Norsigian, Charles J., Kavvas, Erol, Seif, Yara, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2018

High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies

por Broddrick, Jared T., Szubin, Richard, Norsigian, Charles J., Monk, Jonathan M., Palsson, Bernhard O., Parenteau, Mary N.
Publicado 2020

Functional annotation of enzyme-encoding genes using deep learning with transformer layers

por Kim, Gi Bae, Kim, Ji Yeon, Lee, Jong An, Norsigian, Charles J., Palsson, Bernhard O., Lee, Sang Yup
Publicado 2023

Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase–Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates

por Norsigian, Charles J., Attia, Heba, Szubin, Richard, Yassin, Aymen S., Palsson, Bernhard Ø., Aziz, Ramy K., Monk, Jonathan M.
Publicado 2019

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree

por Norsigian, Charles J, Pusarla, Neha, McConn, John Luke, Yurkovich, James T, Dräger, Andreas, Palsson, Bernhard O, King, Zachary
Publicado 2020

Reconstruction and Validation of a Genome-Scale Metabolic Model of Streptococcus oralis (iCJ415), a Human Commensal and Opportunistic Pathogen

por Jensen, Christian S., Norsigian, Charles J., Fang, Xin, Nielsen, Xiaohui C., Christensen, Jens Jørgen, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2020

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

por Kavvas, Erol S., Seif, Yara, Yurkovich, James T., Norsigian, Charles, Poudel, Saugat, Greenwald, William W., Ghatak, Sankha, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2018

Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence

por Norsigian, Charles J., Danhof, Heather A., Brand, Colleen K., Oezguen, Numan, Midani, Firas S., Palsson, Bernhard O., Savidge, Tor C., Britton, Robert A., Spinler, Jennifer K., Monk, Jonathan M.
Publicado 2020

Systems biology approach to functionally assess the Clostridioides difficile pangenome reveals genetic diversity with discriminatory power

por Norsigian, Charles J., Danhof, Heather A., Brand, Colleen K., Midani, Firas S., Broddrick, Jared T., Savidge, Tor C., Britton, Robert A., Palsson, Bernhard O., Spinler, Jennifer K., Monk, Jonathan M.
Publicado 2022

Mathematical models to study the biology of pathogens and the infectious diseases they cause

por Xavier, Joao B., Monk, Jonathan M., Poudel, Saugat, Norsigian, Charles J., Sastry, Anand V., Liao, Chen, Bento, Jose, Suchard, Marc A., Arrieta-Ortiz, Mario L., Peterson, Eliza J.R., Baliga, Nitin S., Stoeger, Thomas, Ruffin, Felicia, Richardson, Reese A.K., Gao, Catherine A., Horvath, Thomas D., Haag, Anthony M., Wu, Qinglong, Savidge, Tor, Yeaman, Michael R.
Publicado 2022