PHOG: a database of supergenomes built from proteome complements

por Merkeev, Igor V, Novichkov, Pavel S, Mironov, Andrey A
Publicado 2006

CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis

por Novichkov, Pavel S, Chandonia, John-Marc, Arkin, Adam P
Publicado 2022

Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities

por Iablokov, Stanislav N., Novichkov, Pavel S., Osterman, Andrei L., Rodionov, Dmitry A.
Publicado 2021

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes

por Novichkov, Pavel S., Ratnere, Igor, Wolf, Yuri I., Koonin, Eugene V., Dubchak, Inna
Publicado 2009

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

por Makarova, Kira S, Sorokin, Alexander V, Novichkov, Pavel S, Wolf, Yuri I, Koonin, Eugene V
Publicado 2007

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

por Novichkov, Pavel S., Brettin, Thomas S., Novichkova, Elena S., Dehal, Paramvir S., Arkin, Adam P., Dubchak, Inna, Rodionov, Dmitry A.
Publicado 2012

σ(54)-dependent regulome in Desulfovibrio vulgaris Hildenborough

por Kazakov, Alexey E., Rajeev, Lara, Chen, Amy, Luning, Eric G., Dubchak, Inna, Mukhopadhyay, Aindrila, Novichkov, Pavel S.
Publicado 2015

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

por Novichkov, Pavel S., Laikova, Olga N., Novichkova, Elena S., Gelfand, Mikhail S., Arkin, Adam P., Dubchak, Inna, Rodionov, Dmitry A.
Publicado 2010

Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes

por Shabalina, Svetlana A., Ogurtsov, Aleksey Y., Spiridonov, Alexey N., Novichkov, Pavel S., Spiridonov, Nikolay A., Koonin, Eugene V.
Publicado 2010

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

por Ravcheev, Dmitry A, Best, Aaron A, Sernova, Natalia V, Kazanov, Marat D, Novichkov, Pavel S, Rodionov, Dmitry A
Publicado 2013

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

por Sun, Eric I, Leyn, Semen A, Kazanov, Marat D, Saier, Milton H, Novichkov, Pavel S, Rodionov, Dmitry A
Publicado 2013

Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria

por Leyn, Semen A., Suvorova, Inna A., Kholina, Tatiana D., Sherstneva, Sofia S., Novichkov, Pavel S., Gelfand, Mikhail S., Rodionov, Dmitry A.
Publicado 2014

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

por Iablokov, Stanislav N., Klimenko, Natalia S., Efimova, Daria A., Shashkova, Tatiana, Novichkov, Pavel S., Rodionov, Dmitry A., Tyakht, Alexander V.
Publicado 2021

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

por Cipriano, Michael J, Novichkov, Pavel N, Kazakov, Alexey E, Rodionov, Dmitry A, Arkin, Adam P, Gelfand, Mikhail S, Dubchak, Inna
Publicado 2013

Comparative genomics and evolution of transcriptional regulons in Proteobacteria

por Leyn, Semen A., Suvorova, Inna A., Kazakov, Alexey E., Ravcheev, Dmitry A., Stepanova, Vita V., Novichkov, Pavel S., Rodionov, Dmitry A.
Publicado 2016

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

por Mutalik, Vivek K., Novichkov, Pavel S., Price, Morgan N., Owens, Trenton K., Callaghan, Mark, Carim, Sean, Deutschbauer, Adam M., Arkin, Adam P.
Publicado 2019

LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species

por Rajeev, Lara, Luning, Eric G., Zane, Grant M., Juba, Thomas R., Kazakov, Alexey E., Novichkov, Pavel S., Wall, Judy D., Mukhopadhyay, Aindrila
Publicado 2019

RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

por Kazakov, Alexei E., Cipriano, Michael J., Novichkov, Pavel S., Minovitsky, Simon, Vinogradov, Dmitry V., Arkin, Adam, Mironov, Andrey A., Gelfand, Mikhail S., Dubchak, Inna
Publicado 2007

Network portal: a database for storage, analysis and visualization of biological networks

por Turkarslan, Serdar, Wurtmann, Elisabeth J., Wu, Wei-Ju, Jiang, Ning, Bare, J. Christopher, Foley, Karen, Reiss, David J., Novichkov, Pavel, Baliga, Nitin S.
Publicado 2014

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome

por Rodionov, Dmitry A., Arzamasov, Aleksandr A., Khoroshkin, Matvei S., Iablokov, Stanislav N., Leyn, Semen A., Peterson, Scott N., Novichkov, Pavel S., Osterman, Andrei L.
Publicado 2019