Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

por Slizovskiy, Ilya B., Mukherjee, Kingshuk, Dean, Christopher J., Boucher, Christina, Noyes, Noelle R.
Publicado 2020

Syotti: scalable bait design for DNA enrichment

por Alanko, Jarno N, Slizovskiy, Ilya B, Lokshtanov, Daniel, Gagie, Travis, Noyes, Noelle R, Boucher, Christina
Publicado 2022

Evaluation of the Impact of Antimicrobial Use Protocols in Porcine Reproductive and Respiratory Syndrome Virus-Infected Swine on Phenotypic Antimicrobial Resistance Patterns

por Odland, Carissa A., Edler, Roy, Noyes, Noelle R., Dee, Scott A., Nerem, Joel, Davies, Peter R.
Publicado 2022

The microbiome of common bedding materials before and after use on commercial dairy farms

por Ray, Tui, Gaire, Tara Nath, Dean, Christopher J., Rowe, Sam, Godden, Sandra M., Noyes, Noelle R.
Publicado 2022

Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes

por Slizovskiy, Ilya B., Oliva, Marco, Settle, Jonathen K., Zyskina, Lidiya V., Prosperi, Mattia, Boucher, Christina, Noyes, Noelle R.
Publicado 2022

Effect of castration timing and weaning strategy on the taxonomic and functional profile of ruminal bacteria and archaea of beef calves

por Diaz, Gerardo R., Gaire, Tara N., Ferm, Peter, Case, Lacey, Caixeta, Luciano S., Goldsmith, Timothy J., Armstrong, Joe, Noyes, Noelle R.
Publicado 2023

Evaluation of Contamination in Milk Samples Pooled From Independently Collected Quarters Within a Laboratory Setting

por Dean, Chris J., Peña-Mosca, Felipe, Ray, Tui, Heins, Bradley J., Machado, Vinicius S., Pinedo, Pablo J., Caixeta, Luciano S., Noyes, Noelle R.
Publicado 2022

ggMOB: Elucidation of genomic conjugative features and associated cargo genes across bacterial genera using genus-genus mobilization networks

por Nayar, Gowri, Terrizzano, Ignacio, Seabolt, Ed, Agarwal, Akshay, Boucher, Christina, Ruiz, Jaime, Slizovskiy, Ilya B., Kaufman, James H., Noyes, Noelle R.
Publicado 2022

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

por Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Publicado 2019

Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use

por Benedict, Katharine M., Gow, Sheryl P., McAllister, Tim A., Booker, Calvin W., Hannon, Sherry J., Checkley, Sylvia L., Noyes, Noelle R., Morley, Paul S.
Publicado 2015

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
Publicado 2019

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

por Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado 2019

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle

por Weinroth, Margaret D., Scott, H. Morgan, Norby, Bo, Loneragan, Guy H., Noyes, Noelle R., Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R., Morley, Paul S., Belk, Keith E.
Publicado 2018

Age influences the temporal dynamics of microbiome and antimicrobial resistance genes among fecal bacteria in a cohort of production pigs

por Gaire, Tara N., Scott, H. Morgan, Noyes, Noelle R., Ericsson, Aaron C., Tokach, Michael D., Menegat, Mariana B., Vinasco, Javier, Roenne, Boyd, Ray, Tui, Nagaraja, T. G., Volkova, Victoriya V.
Publicado 2023

MEGARes: an antimicrobial resistance database for high throughput sequencing

por Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado 2017

Evaluating the effects of antimicrobial drug use on the ecology of antimicrobial resistance and microbial community structure in beef feedlot cattle

por Doster, Enrique, Pinnell, Lee J., Noyes, Noelle R., Parker, Jennifer K., Anderson, Cameron A., Booker, Calvin W., Hannon, Sherry J., McAllister, Tim A., Gow, Sheryl P., Belk, Keith E., Morley, Paul S.
Publicado 2022

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

por Yang, Xiang, Noyes, Noelle R., Doster, Enrique, Martin, Jennifer N., Linke, Lyndsey M., Magnuson, Roberta J., Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina, Morley, Paul S., Belk, Keith E.
Publicado 2016

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
Publicado 2018

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

por Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Publicado 2019

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

por Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
Publicado 2017