Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation

por Shimoni, Yishai, Nudelman, German, Hayot, Fernand, Sealfon, Stuart C.
Publicado 2011

BioPP: a tool for web-publication of biological networks

por Viswanathan, Ganesh A, Nudelman, German, Patil, Sonali, Sealfon, Stuart C
Publicado 2007

Getting Started in Biological Pathway Construction and Analysis

por Viswanathan, Ganesh A, Seto, Jeremy, Patil, Sonali, Nudelman, German, Sealfon, Stuart C
Publicado 2008

Noise propagation through extracellular signaling leads to fluctuations in gene expression

por Tabbaa, Omar P, Nudelman, German, Sealfon, Stuart C, Hayot, Fernand, Jayaprakash, Ciriyam
Publicado 2013

Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase

por Patil, Sonali, Pincas, Hanna, Seto, Jeremy, Nudelman, German, Nudelman, Irina, Sealfon, Stuart C
Publicado 2010

Combinatorial Cytokine Code Generates Anti-Viral State in Dendritic Cells

por Hartmann, Boris M., Marjanovic, Nada, Nudelman, German, Moran, Thomas M., Sealfon, Stuart C.
Publicado 2014

MOCCASIN: converting MATLAB ODE models to SBML

por Gómez, Harold F., Hucka, Michael, Keating, Sarah M., Nudelman, German, Iber, Dagmar, Sealfon, Stuart C.
Publicado 2016

High resolution annotation of zebrafish transcriptome using long-read sequencing

por Nudelman, German, Frasca, Antonio, Kent, Brandon, Sadler, Kirsten C., Sealfon, Stuart C., Walsh, Martin J., Zaslavsky, Elena
Publicado 2018

Volatile Evolution of Long Non-Coding RNA Repertoire in Retinal Pigment Epithelium: Insights from Comparison of Bovine and Human RNA Expression Profiles

por Postnikova, Olga A., Rogozin, Igor B., Samuel, William, Nudelman, German, Babenko, Vladimir N., Poliakov, Eugenia, Redmond, T. Michael
Publicado 2019

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection

por Zaslavsky, Elena, Nudelman, German, Marquez, Susanna, Hershberg, Uri, Hartmann, Boris M, Thakar, Juilee, Sealfon, Stuart C, Kleinstein, Steven H
Publicado 2013

Role of Cell-to-Cell Variability in Activating a Positive Feedback Antiviral Response in Human Dendritic Cells

por Hu, Jianzhong, Nudelman, German, Shimoni, Yishai, Kumar, Madhu, Ding, Yaomei, López, Carolina, Hayot, Fernand, Wetmur, James G., Sealfon, Stuart C.
Publicado 2011

Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses

por Nudelman, Irina, Kudrin, Daniil, Nudelman, German, Deshpande, Raamesh, Hartmann, Boris M., Kleinstein, Steven H., Myers, Chad L., Sealfon, Stuart C., Zaslavsky, Elena
Publicado 2021

Coregulation mapping based on individual phenotypic variation in response to virus infection

por Nudelman, German, Ge, Yongchao, Hu, Jianzhong, Kumar, Madhu, Seto, Jeremy, Duke, Jamie L, Kleinstein, Steven H, Hayot, Fernand, Sealfon, Stuart C, Wetmur, James G
Publicado 2010

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

por Rogozin, Igor B., Lada, Artem G., Goncearenco, Alexander, Green, Michael R., De, Subhajyoti, Nudelman, German, Panchenko, Anna R., Koonin, Eugene V., Pavlov, Youri I.
Publicado 2016

Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone

por Ruf-Zamojski, Frederique, Fribourg, Miguel, Ge, Yongchao, Nair, Venugopalan, Pincas, Hanna, Zaslavsky, Elena, Nudelman, German, Tuminello, Stephanie J., Watanabe, Hideo, Turgeon, Judith L., Sealfon, Stuart C.
Publicado 2018

Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma

por Tome-Garcia, Jessica, Erfani, Parsa, Nudelman, German, Tsankov, Alexander M., Katsyv, Igor, Tejero, Rut, Bin Zhang, Walsh, Martin, Friedel, Roland H., Zaslavsky, Elena, Tsankova, Nadejda M.
Publicado 2018

Prototypical oncogene family Myc defines unappreciated distinct lineage states of small cell lung cancer

por Patel, Ayushi S., Yoo, Seungyeul, Kong, Ranran, Sato, Takashi, Sinha, Abhilasha, Karam, Sarah, Bao, Li, Fridrikh, Maya, Emoto, Katsura, Nudelman, German, Powell, Charles A., Beasley, Mary Beth, Zhu, Jun, Watanabe, Hideo
Publicado 2021

Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR(+) Populations with Stem Cell Properties

por Tome-Garcia, Jessica, Tejero, Rut, Nudelman, German, Yong, Raymund L., Sebra, Robert, Wang, Huaien, Fowkes, Mary, Magid, Margret, Walsh, Martin, Silva-Vargas, Violeta, Zaslavsky, Elena, Friedel, Roland H., Doetsch, Fiona, Tsankova, Nadejda M.
Publicado 2017

Pandemic H1N1 influenza A viruses suppress immunogenic RIPK3-driven dendritic cell death

por Hartmann, Boris M., Albrecht, Randy A., Zaslavsky, Elena, Nudelman, German, Pincas, Hanna, Marjanovic, Nada, Schotsaert, Michael, Martínez-Romero, Carles, Fenutria, Rafael, Ingram, Justin P., Ramos, Irene, Fernandez-Sesma, Ana, Balachandran, Siddharth, García-Sastre, Adolfo, Sealfon, Stuart C.
Publicado 2017

High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy

por Pai, Balagopal, Tome-Garcia, Jessica, Cheng, Wan Sze, Nudelman, German, Beaumont, Kristin G., Ghatan, Saadi, Panov, Fedor, Caballero, Elodia, Sarpong, Kwadwo, Marcuse, Lara, Yoo, Jiyeoun, Jiang, Yan, Schaefer, Anne, Akbarian, Schahram, Sebra, Robert, Pinto, Dalila, Zaslavsky, Elena, Tsankova, Nadejda M.
Publicado 2022