Draft Genome Sequence of Brevibacillus sp. Strain LEMMJ03, Isolated from an Antarctic Volcano

por Schultz, Júnia, Kallies, René, Nunes da Rocha, Ulisses, Rosado, Alexandre Soares
Publicado 2019

Draft Genome Sequence of Geobacillus sp. Strain LEMMJ02, a Thermophile Isolated from Deception Island, an Active Volcano in Antarctica

por Schultz, Júnia, Kallies, René, Nunes da Rocha, Ulisses, Rosado, Alexandre Soares
Publicado 2019

Polyphasic Analysis Reveals Potential Petroleum Hydrocarbon Degradation and Biosurfactant Production by Rare Biosphere Thermophilic Bacteria From Deception Island, an Active Antarc...

por Schultz, Júnia, Argentino, Isabella Campelo Vilardi, Kallies, René, Nunes da Rocha, Ulisses, Rosado, Alexandre Soares
Publicado 2022

StandEnA: a customizable workflow for standardized annotation and generating a presence–absence matrix of proteins

por Chafra, Fatma, Borim Correa, Felipe, Oni, Faith, Konu Karakayalı, Özlen, Stadler, Peter F, Nunes da Rocha, Ulisses
Publicado 2023

The Rhizosphere Selects for Particular Groups of Acidobacteria and Verrucomicrobia

por Nunes da Rocha, Ulisses, Plugge, Caroline M., George, Isabelle, van Elsas, Jan Dirk, van Overbeek, Leonard Simon
Publicado 2013

Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters

por Kallies, René, Hölzer, Martin, Brizola Toscan, Rodolfo, Nunes da Rocha, Ulisses, Anders, John, Marz, Manja, Chatzinotas, Antonis
Publicado 2019

Mining Synergistic Microbial Interactions: A Roadmap on How to Integrate Multi-Omics Data

por Saraiva, Joao Pedro, Worrich, Anja, Karakoç, Canan, Kallies, Rene, Chatzinotas, Antonis, Centler, Florian, Nunes da Rocha, Ulisses
Publicado 2021

Stabilizing microbial communities by looped mass transfer

por Li, Shuang, Abdulkadir, Nafi'u, Schattenberg, Florian, Nunes da Rocha, Ulisses, Grimm, Volker, Müller, Susann, Liu, Zishu
Publicado 2022

Bacteria increase arid-land soil surface temperature through the production of sunscreens

por Couradeau, Estelle, Karaoz, Ulas, Lim, Hsiao Chien, Nunes da Rocha, Ulisses, Northen, Trent, Brodie, Eoin, Garcia-Pichel, Ferran
Publicado 2016

Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in mos...

por Magnúsdóttir, Stefanía, Saraiva, Joao Pedro, Bartholomäus, Alexander, Soheili, Majid, Toscan, Rodolfo Brizola, Zhang, Junya, Nunes da Rocha, Ulisses
Publicado 2023

Electrochemical and Microbial Dissection of Electrified Biotrickling Filters

por Korth, Benjamin, Pous, Narcís, Hönig, Richard, Haus, Philip, Corrêa, Felipe Borim, Nunes da Rocha, Ulisses, Puig, Sebastià, Harnisch, Falk
Publicado 2022

PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning

por Oliveira Monteiro, Lummy Maria, Saraiva, João Pedro, Brizola Toscan, Rodolfo, Stadler, Peter F., Silva-Rocha, Rafael, Nunes da Rocha, Ulisses
Publicado 2022

Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture

por Liu, Bin, Sträuber, Heike, Saraiva, João, Harms, Hauke, Silva, Sandra Godinho, Kasmanas, Jonas Coelho, Kleinsteuber, Sabine, Nunes da Rocha, Ulisses
Publicado 2022

Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host

por Rosado, Phillipe M., Cardoso, Pedro M., Rosado, João G., Schultz, Júnia, Nunes da Rocha, Ulisses, Keller-Costa, Tina, Peixoto, Raquel S.
Publicado 2023

Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome

por Keller-Costa, Tina, Kozma, Lydia, Silva, Sandra G., Toscan, Rodolfo, Gonçalves, Jorge, Lago-Lestón, Asunción, Kyrpides, Nikos C., Nunes da Rocha, Ulisses, Costa, Rodrigo
Publicado 2022

Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil

por Nuccio, Erin E., Nguyen, Nhu H., Nunes da Rocha, Ulisses, Mayali, Xavier, Bougoure, Jeremy, Weber, Peter K., Brodie, Eoin, Firestone, Mary, Pett-Ridge, Jennifer
Publicado 2021

Draft Genome Sequence of Fusarium equiseti K3, a Fungal Species Isolated from Hexachlorocyclohexane-Contaminated Soil

por Khan, Nelson, Toscan, Rodolfo Brizola, Lunayo, Accadius, Wamalwa, Benson, Muge, Edward, Mulaa, Francis J., Kallies, René, Harms, Hauke, Wick, Lukas Y., Nunes da Rocha, Ulisses
Publicado 2021

Draft Genome Sequences of Two Sphingobium Species Associated with Hexachlorocyclohexane (HCH) Degradation Isolated from an HCH-Contaminated Soil

por Khan, Nelson, Brizola Toscan, Rodolfo, Lunayo, Accadius, Wamalwa, Benson, Muge, Edward, Mulaa, Francis J., Kallies, René, Harms, Hauke, Wick, Lukas Y., Nunes da Rocha, Ulisses
Publicado 2022

OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes

por Saraiva, João Pedro, Bartholomäus, Alexandre, Kallies, René, Gomes, Marta, Bicalho, Marcos, Coelho Kasmanas, Jonas, Vogt, Carsten, Chatzinotas, Antonis, Stadler, Peter, Dias, Oscar, Nunes da Rocha, Ulisses
Publicado 2021

Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy

por Bonidia, Robson P., Avila Santos, Anderson P., de Almeida, Breno L. S., Stadler, Peter F., Nunes da Rocha, Ulisses, Sanches, Danilo S., de Carvalho, André C. P. L. F.
Publicado 2022