Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster

por Timmins-Schiffman, Emma, Nunn, Brook L., Goodlett, David R., Roberts, Steven B.
Publicado 2013

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides

por Timmins-Schiffman, Emma, Mikan, Molly P., Ting, Ying Sonia, Harvey, H. Rodger, Nunn, Brook L.
Publicado 2018

Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors

por Tisthammer, Kaho H., Timmins-Schiffman, Emma, Seneca, Francois O., Nunn, Brook L., Richmond, Robert H.
Publicado 2021

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas

por Timmins-Schiffman, Emma, Coffey, William D, Hua, Wilber, Nunn, Brook L, Dickinson, Gary H, Roberts, Steven B
Publicado 2014

The ongoing need for rates: can physiology and omics come together to co-design the measurements needed to understand complex ocean biogeochemistry?

por Strzepek, Robert F, Nunn, Brook L, Bach, Lennart T, Berges, John A, Young, Erica B, Boyd, Philip W
Publicado 2022

Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi

por Krayushkina, Dasha, Timmins-Schiffman, Emma, Faux, Jessica, May, Damon H., Riffle, Michael, Harvey, H. Rodger, Nunn, Brook L.
Publicado 2019

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data

por Riffle, Michael, May, Damon H., Timmins-Schiffman, Emma, Mikan, Molly P., Jaschob, Daniel, Noble, William Stafford, Nunn, Brook L.
Publicado 2017

Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery

por Timmins-Schiffman, Emma, White, Samuel J., Thompson, Rhonda Elliott, Vadopalas, Brent, Eudeline, Benoit, Nunn, Brook L., Roberts, Steven B.
Publicado 2021

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

por Timmins-Schiffman, Emma, May, Damon H, Mikan, Molly, Riffle, Michael, Frazar, Chris, Harvey, H R, Noble, William S, Nunn, Brook L
Publicado 2017

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

por Mikan, Molly P., Harvey, H. Rodger, Timmins-Schiffman, Emma, Riffle, Michael, May, Damon H., Salter, Ian, Noble, William S., Nunn, Brook L.
Publicado 2019

Diatom Proteomics Reveals Unique Acclimation Strategies to Mitigate Fe Limitation

por Nunn, Brook L., Faux, Jessica F., Hippmann, Anna A., Maldonado, Maria T., Harvey, H. Rodger, Goodlett, David R., Boyd, Philip W., Strzepek, Robert F.
Publicado 2013

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality

por Pollara, Scott B., Becker, Jamie W., Nunn, Brook L., Boiteau, Rene, Repeta, Daniel, Mudge, Miranda C., Downing, Grayton, Chase, Davis, Harvey, Elizabeth L., Whalen, Kristen E.
Publicado 2021

Survey of metaproteomics software tools for functional microbiome analysis

por Sajulga, Ray, Easterly, Caleb, Riffle, Michael, Mesuere, Bart, Muth, Thilo, Mehta, Subina, Kumar, Praveen, Johnson, James, Gruening, Bjoern Andreas, Schiebenhoefer, Henning, Kolmeder, Carolin A., Fuchs, Stephan, Nunn, Brook L., Rudney, Joel, Griffin, Timothy J., Jagtap, Pratik D.
Publicado 2020

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

por Blank, Clemens, Easterly, Caleb, Gruening, Bjoern, Johnson, James, Kolmeder, Carolin A., Kumar, Praveen, May, Damon, Mehta, Subina, Mesuere, Bart, Brown, Zachary, Elias, Joshua E., Hervey, W. Judson, McGowan, Thomas, Muth, Thilo, Nunn, Brook L., Rudney, Joel, Tanca, Alessandro, Griffin, Timothy J., Jagtap, Pratik D.
Publicado 2018