Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation

por Nursimulu, Nirvana, Moses, Alan M., Parkinson, John
Publicado 2022

MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

por Taj, Billy, Adeolu, Mobolaji, Xiong, Xuejian, Ang, Jordan, Nursimulu, Nirvana, Parkinson, John
Publicado 2023

Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii

por Song, Carl, Chiasson, Melissa A, Nursimulu, Nirvana, Hung, Stacy S, Wasmuth, James, Grigg, Michael E, Parkinson, John
Publicado 2013

Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets

por Curran, David M, Grote, Alexandra, Nursimulu, Nirvana, Geber, Adam, Voronin, Dennis, Jones, Drew R, Ghedin, Elodie, Parkinson, John
Publicado 2020

Systems-Based Analysis of the Sarcocystis neurona Genome Identifies Pathways That Contribute to a Heteroxenous Life Cycle

por Blazejewski, Tomasz, Nursimulu, Nirvana, Pszenny, Viviana, Dangoudoubiyam, Sriveny, Namasivayam, Sivaranjani, Chiasson, Melissa A., Chessman, Kyle, Tonkin, Michelle, Swapna, Lakshmipuram S., Hung, Stacy S., Bridgers, Joshua, Ricklefs, Stacy M., Boulanger, Martin J., Dubey, Jitender P., Porcella, Stephen F., Kissinger, Jessica C., Howe, Daniel K., Grigg, Michael E., Parkinson, John
Publicado 2015

The genome of Onchocerca volvulus, agent of river blindness

por Cotton, James A., Bennuru, Sasisekhar, Grote, Alexandra, Harsha, Bhavana, Tracey, Alan, Beech, Robin, Doyle, Stephen R., Dunn, Matthew, Dunning Hotopp, Julie C., Holroyd, Nancy, Kikuchi, Taisei, Lambert, Olivia, Mhashilkar, Amruta, Mutowo, Prudence, Nursimulu, Nirvana, Ribeiro, Jose M. C., Rogers, Matthew B., Stanley, Eleanor, Swapna, Lakshmipuram S., Tsai, Isheng J., Unnasch, Thomas R., Voronin, Denis, Parkinson, John, Nutman, Thomas B., Ghedin, Elodie, Berriman, Matthew, Lustigman, Sara
Publicado 2016