sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden

por Acharya, Sonia N., Nichols, Ruth V., Rylaarsdam, Lauren E., O’Connell, Brendan L., Braun, Theodore P., Adey, Andrew C.
Publicado 2023

High-throughput robust single-cell DNA methylation profiling with sciMETv2

por Nichols, Ruth V., O’Connell, Brendan L., Mulqueen, Ryan M., Thomas, Jerushah, Woodfin, Ashley R., Acharya, Sonia, Mandel, Gail, Pokholok, Dmitry, Steemers, Frank J., Adey, Andrew C.
Publicado 2022

Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing

por O'Connell, Brendan L., Nichols, Ruth V., Pokholok, Dmitry, Thomas, Jerushah, Acharya, Sonia N., Nishida, Andrew, Thornton, Casey A., Co, Marissa, Fields, Andrew J., Steemers, Frank J., Adey, Andrew C.
Publicado 2023

Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility

por Queitsch, Konstantin, Moore, Travis W., O’Connell, Brendan L., Nichols, Ruth V., Muschler, John L., Keith, Dove, Lopez, Charles, Sears, Rosalie C., Mills, Gordon B., Yardımcı, Galip Gürkan, Adey, Andrew C.
Publicado 2023

High-content single-cell combinatorial indexing

por Mulqueen, Ryan M., Pokholok, Dmitry, O’Connell, Brendan L., Thornton, Casey A., Zhang, Fan, O’Roak, Brian J., Link, Jason, Yardımcı, Galip Gürkan, Sears, Rosalie C., Steemers, Frank J., Adey, Andrew C.
Publicado 2021

Deeply conserved synteny and the evolution of metazoan chromosomes

por Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T., O’Connell, Brendan L., Dear, Paul, Martinez, Daniel E., Steele, Robert E., Green, Richard E., David, Charles N., Rokhsar, Daniel S.
Publicado 2022

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

por Putnam, Nicholas H., O'Connell, Brendan L., Stites, Jonathan C., Rice, Brandon J., Blanchette, Marco, Calef, Robert, Troll, Christopher J., Fields, Andrew, Hartley, Paul D., Sugnet, Charles W., Haussler, David, Rokhsar, Daniel S., Green, Richard E.
Publicado 2016

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

por Rice, Edward S., Kohno, Satomi, John, John St., Pham, Son, Howard, Jonathan, Lareau, Liana F., O'Connell, Brendan L., Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, Roy N., Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R., Ray, David A., Paten, Benedict, Guillette, Louis J., Green, Richard E.
Publicado 2017

Improved reference genome for the domestic horse increases assembly contiguity and composition

por Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O′Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.
Publicado 2018

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition

por Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O’Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.
Publicado 2019