Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

por O'Connor, Patrick B. F., Andreev, Dmitry E., Baranov, Pavel V.
Publicado 2016

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

por Kiniry, Stephen J, O’Connor, Patrick B F, Michel, Audrey M, Baranov, Pavel V
Publicado 2019

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments

por O’Connor, Patrick B. F., Li, Gene-Wei, Weissman, Jonathan S., Atkins, John F., Baranov, Pavel V.
Publicado 2013

GWIPS-viz: 2018 update

por Michel, Audrey M, Kiniry, Stephen J, O’Connor, Patrick B F, Mullan, James P, Baranov, Pavel V
Publicado 2018

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

por Andreev, Dmitry E., O'Connor, Patrick B. F., Loughran, Gary, Dmitriev, Sergey E., Baranov, Pavel V., Shatsky, Ivan N.
Publicado 2017

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

por Michel, Audrey M., Mullan, James P. A., Velayudhan, Vimalkumar, O'Connor, Patrick B. F., Donohue, Claire A., Baranov, Pavel V.
Publicado 2016

The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

por Dieudonné, Francois-Xavier, O’Connor, Patrick B. F., Gubler-Jaquier, Pascale, Yasrebi, Haleh, Conne, Beatrice, Nikolaev, Sergey, Antonarakis, Stylianos, Baranov, Pavel V., Curran, Joseph
Publicado 2015

Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context

por Benitez-Cantos, Maria S., Yordanova, Martina M., O'Connor, Patrick B.F., Zhdanov, Alexander V., Kovalchuk, Sergey I., Papkovsky, Dmitri B., Andreev, Dmitry E., Baranov, Pavel V.
Publicado 2020

Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles

por Hedayioglu, Fabio, Mead, Emma J, O'Connor, Patrick B F, Skiotys, Matas, Sansom, Owen J, Mallucci, Giovanna R, Willis, Anne E, Baranov, Pavel V, Smales, C Mark, von der Haar, Tobias
Publicado 2022

GWIPS-viz: development of a ribo-seq genome browser

por Michel, Audrey M., Fox, Gearoid, M. Kiran, Anmol, De Bo, Christof, O’Connor, Patrick B. F., Heaphy, Stephen M., Mullan, James P. A., Donohue, Claire A., Higgins, Desmond G., Baranov, Pavel V.
Publicado 2014

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

por Chu, Jennifer, Zhang, Wenhan, Cencic, Regina, O’Connor, Patrick B.F., Robert, Francis, Devine, William G., Selznick, Asher, Henkel, Thomas, Merrick, William C., Brown, Lauren E., Baranov, Pavel V., Porco, John A., Pelletier, Jerry
Publicado 2020

Polysomes Bypass a 50-Nucleotide Coding Gap Less Efficiently Than Monosomes Due to Attenuation of a 5′ mRNA Stem–Loop and Enhanced Drop-off

por O'Loughlin, Sinéad, Capece, Mark C., Klimova, Mariia, Wills, Norma M., Coakley, Arthur, Samatova, Ekaterina, O'Connor, Patrick B.F., Loughran, Gary, Weissman, Jonathan S., Baranov, Pavel V., Rodnina, Marina V., Puglisi, Joseph D., Atkins, John F.
Publicado 2020

In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

por Smekalova, Elena M., Gerashchenko, Maxim V., O’Connor, Patrick B.F., Whittaker, Charles A., Kauffman, Kevin J., Fefilova, Anna S., Zatsepin, Timofei S., Bogorad, Roman L., Baranov, Pavel V., Langer, Robert, Gladyshev, Vadim N., Anderson, Daniel G., Koteliansky, Victor
Publicado 2019