Grand Challenges in Bioinformatics Data Visualization

por O'Donoghue, Seán I.
Publicado 2021

The Dark Proteome Database

por Perdigão, Nelson, Rosa, Agostinho C., O’Donoghue, Seán I.
Publicado 2017

A benchmark dataset for analyzing and visualizing the dynamic epiproteome

por Kaur, Sandeep, Baldi, Benedetta, Vuong, Jenny, O'Donoghue, Seàn I.
Publicado 2019

Integrated visual analysis of protein structures, sequences, and feature data

por Stolte, Christian, Sabir, Kenneth S, Heinrich, Julian, Hammang, Christopher J, Schafferhans, Andrea, O'Donoghue, Seán I
Publicado 2015

Comprehensive comparison of large-scale tissue expression datasets

por Santos, Alberto, Tsafou, Kalliopi, Stolte, Christian, Pletscher-Frankild, Sune, O’Donoghue, Seán I., Jensen, Lars Juhl
Publicado 2015

Arena3D: visualization of biological networks in 3D

por Pavlopoulos, Georgios A, O'Donoghue, Seán I, Satagopam, Venkata P, Soldatos, Theodoros G, Pafilis, Evangelos, Schneider, Reinhard
Publicado 2008

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

por Binder, Janos X., Pletscher-Frankild, Sune, Tsafou, Kalliopi, Stolte, Christian, O’Donoghue, Seán I., Schneider, Reinhard, Jensen, Lars Juhl
Publicado 2014

Temporal ordering of omics and multiomic events inferred from time-series data

por Kaur, Sandeep, Peters, Timothy J., Yang, Pengyi, Luu, Laurence Don Wai, Vuong, Jenny, Krycer, James R., O’Donoghue, Seán I.
Publicado 2020

Martini: using literature keywords to compare gene sets

por Soldatos, Theodoros G., O’Donoghue, Seán I., Satagopam, Venkata P., Jensen, Lars J., Brown, Nigel P., Barbosa-Silva, Adriano, Schneider, Reinhard
Publicado 2010

Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition

por Marji, Jackleen, O'Donoghue, Seán I., McClintock, Dayle, Satagopam, Venkata P., Schneider, Reinhard, Ratner, Desiree, J. Worman, Howard, Gordon, Leslie B., Djabali, Karima
Publicado 2010

Caipirini: using gene sets to rank literature

por Soldatos, Theodoros G, O'Donoghue, Seán I, Satagopam, Venkata P, Barbosa-Silva, Adriano, Pavlopoulos, Georgios A, Wanderley-Nogueira, Ana Carolina, Soares-Cavalcanti, Nina Mota, Schneider, Reinhard
Publicado 2012

Visualization of macromolecular structures

por O'Donoghue, Seán I, Goodsell, David S, Frangakis, Achilleas S, Jossinet, Fabrice, Laskowski, Roman A, Nilges, Michael, Saibil, Helen R, Schafferhans, Andrea, Wade, Rebecca C, Westhof, Eric, Olson, Arthur J
Publicado 2010

SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms

por O’Donoghue, Seán I, Schafferhans, Andrea, Sikta, Neblina, Stolte, Christian, Kaur, Sandeep, Ho, Bosco K, Anderson, Stuart, Procter, James B, Dallago, Christian, Bordin, Nicola, Adcock, Matt, Rost, Burkhard
Publicado 2021

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

por Taberlay, Phillippa C., Achinger-Kawecka, Joanna, Lun, Aaron T.L., Buske, Fabian A., Sabir, Kenneth, Gould, Cathryn M., Zotenko, Elena, Bert, Saul A., Giles, Katherine A., Bauer, Denis C., Smyth, Gordon K., Stirzaker, Clare, O'Donoghue, Sean I., Clark, Susan J.
Publicado 2016

Text mining for biology - the way forward: opinions from leading scientists

por Altman, Russ B, Bergman, Casey M, Blake, Judith, Blaschke, Christian, Cohen, Aaron, Gannon, Frank, Grivell, Les, Hahn, Udo, Hersh, William, Hirschman, Lynette, Jensen, Lars Juhl, Krallinger, Martin, Mons, Barend, O'Donoghue, Seán I, Peitsch, Manuel C, Rebholz-Schuhmann, Dietrich, Shatkay, Hagit, Valencia, Alfonso
Publicado 2008

Increased core body temperature exacerbates defective protein prenylation in mouse models of mevalonate kinase deficiency

por Munoz, Marcia A., Skinner, Oliver P., Masle-Farquhar, Etienne, Jurczyluk, Julie, Xiao, Ya, Fletcher, Emma K., Kristianto, Esther, Hodson, Mark P., O’Donoghue, Seán I., Kaur, Sandeep, Brink, Robert, Zahra, David G., Deenick, Elissa K., Perry, Kristen A., Robertson, Avril A.B., Mehr, Sam, Hissaria, Pravin, Mulders-Manders, Catharina M., Simon, Anna, Rogers, Michael J.
Publicado 2022