How can automated linguistic analysis help to discern functional cognitive disorder from healthy controls and mild cognitive impairment?

por Beavis, Lizzie, O'Malley, Ronan, Mirheidari, Bahman, Christensen, Heidi, Blackburn, Daniel
Publicado 2021

An optimized ChIP‐Seq framework for profiling histone modifications in Chromochloris zofingiensis

por Strenkert, Daniela, Mingay, Matthew, Schmollinger, Stefan, Chen, Cindy, O'Malley, Ronan C., Merchant, Sabeeha S.
Publicado 2022

Voltage-dependent gating of SV channel TPC1 confers vacuole excitability

por Jaślan, Dawid, Dreyer, Ingo, Lu, Jinping, O’Malley, Ronan, Dindas, Julian, Marten, Irene, Hedrich, Rainer
Publicado 2019

Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication

por Panchy, Nicholas L., Azodi, Christina B., Winship, Eamon F., O’Malley, Ronan C., Shiu, Shin-Han
Publicado 2019

Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning

por Ho, Harrison, Chovatia, Mansi, Egan, Rob, He, Guifen, Yoshinaga, Yuko, Liachko, Ivan, O’Malley, Ronan, Wang, Zhong
Publicado 2023

Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing

por Huberman, Lori B., Wu, Vincent W., Lee, Juna, Daum, Chris, O’Malley, Ronan C., Glass, N. Louise
Publicado 2021

The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram

por Prigge, Michael J., Greenham, Kathleen, Zhang, Yi, Santner, Aaron, Castillejo, Cristina, Mutka, Andrew M., O’Malley, Ronan C., Ecker, Joseph R., Kunkel, Barbara N., Estelle, Mark
Publicado 2016

Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii

por Weng, Xiaoyu, Song, Haili, Sreedasyam, Avinash, Haque, Taslima, Zhang, Li, Chen, Cindy, Yoshinaga, Yuko, Williams, Melissa, O’Malley, Ronan C, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E
Publicado 2023

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

por Shulse, Christine N., Cole, Benjamin J., Ciobanu, Doina, Lin, Junyan, Yoshinaga, Yuko, Gouran, Mona, Turco, Gina M., Zhu, Yiwen, O’Malley, Ronan C., Brady, Siobhan M., Dickel, Diane E.
Publicado 2019

Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination

por Hyden, Brennan, Carper, Dana L., Abraham, Paul E., Yuan, Guoliang, Yao, Tao, Baumgart, Leo, Zhang, Yu, Chen, Cindy, O'Malley, Ronan, Chen, Jin‐Gui, Yang, Xiaohan, Hettich, Robert L., Tuskan, Gerald A., Smart, Lawrence B.
Publicado 2023

CrY2H-seq: a massively-multiplexed assay for deep coverage interactome mapping

por Wanamaker, Shelly A., Garza, Renee M., MacWilliams, Andrew, Nery, Joseph R., Bartlett, Anna, Castanon, Rosa, Goubil, Adeline, Feeney, Joseph, O’Malley, Ronan, Huang, Shao-shan Carol, Zhang, Zhuzhu Z., Galli, Mary, Ecker, Joseph R.
Publicado 2017

Novel genotype-phenotype and MRI correlations in a large cohort of patients with SPG7 mutations

por Hewamadduma, Channa A., Hoggard, Nigel, O'Malley, Ronan, Robinson, Megan K., Beauchamp, Nick J., Segamogaite, Ruta, Martindale, Jo, Rodgers, Tobias, Rao, Ganesh, Sarrigiannis, Ptolemaios, Shanmugarajah, Priya, Zis, Panagiotis, Sharrack, Basil, McDermott, Christopher J., Shaw, Pamela J., Hadjivassiliou, Marios
Publicado 2018

Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug

por Meyers, Desiree J., Leigh, Brittany A., Huntemann, Marcel, Clum, Alicia, Ritter, Stephan, Palaniappan, Krishnaveni, Chen, I-Min, Stamatis, Dimitrios, Reddy, T. B. K., O’Malley, Ronan, Daum, Chris, Shapiro, Nicole, Ivanova, Natalia, Kyrpides, Nikos C., Woyke, Tanja, Whitman, William B.
Publicado 2020

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus

por Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise
Publicado 2020

DOE JGI Metagenome Workflow

por Clum, Alicia, Huntemann, Marcel, Bushnell, Brian, Foster, Brian, Foster, Bryce, Roux, Simon, Hajek, Patrick P., Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Yoshinaga, Yuko, O’Malley, Ronan, Seshadri, Rekha, Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A., Chen, I-Min A., Copeland, Alex, Ivanova, Natalia N.
Publicado 2021

The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis

por Potok, Magdalena E., Zhong, Zhenhui, Picard, Colette L., Liu, Qikun, Do, Truman, Jacobsen, Cassidy E., Sakr, Ocean, Naranbaatar, Bilguudei, Thilakaratne, Ruwan, Khnkoyan, Zhanna, Purl, Megan, Cheng, Harrison, Vervaet, Helena, Feng, Suhua, Rayatpisheh, Shima, Wohlschlegel, James A., O’Malley, Ronan C., Ecker, Joseph R., Jacobsen, Steven E.
Publicado 2022

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

por Sevim, Volkan, Lee, Juna, Egan, Robert, Clum, Alicia, Hundley, Hope, Lee, Janey, Everroad, R. Craig, Detweiler, Angela M., Bebout, Brad M., Pett-Ridge, Jennifer, Göker, Markus, Murray, Alison E., Lindemann, Stephen R., Klenk, Hans-Peter, O’Malley, Ronan, Zane, Matthew, Cheng, Jan-Fang, Copeland, Alex, Daum, Christopher, Singer, Esther, Woyke, Tanja
Publicado 2019

Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics

por Van Goethem, Marc W., Osborn, Andrew R., Bowen, Benjamin P., Andeer, Peter F., Swenson, Tami L., Clum, Alicia, Riley, Robert, He, Guifen, Koriabine, Maxim, Sandor, Laura, Yan, Mi, Daum, Chris G., Yoshinaga, Yuko, Makhalanyane, Thulani P., Garcia-Pichel, Ferran, Visel, Axel, Pennacchio, Len A., O’Malley, Ronan C., Northen, Trent R.
Publicado 2021

Plant single-cell solutions for energy and the environment

por Cole, Benjamin, Bergmann, Dominique, Blaby-Haas, Crysten E., Blaby, Ian K., Bouchard, Kristofer E., Brady, Siobhan M., Ciobanu, Doina, Coleman-Derr, Devin, Leiboff, Samuel, Mortimer, Jenny C., Nobori, Tatsuya, Rhee, Seung Y., Schmutz, Jeremy, Simmons, Blake A., Singh, Anup K., Sinha, Neelima, Vogel, John P., O’Malley, Ronan C., Visel, Axel, Dickel, Diane E.
Publicado 2021

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

por Chaput, Gina, Ford, Jacob, DeDiego, Lani, Narayanan, Achala, Tam, Wing Yin, Whalen, Meghan, Huntemann, Marcel, Clum, Alicia, Spunde, Alex, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Chen, I-Min, Stamatis, Dimitrios, Reddy, T. B. K., O’Malley, Ronan, Daum, Chris, Shapiro, Nicole, Ivanova, Natalia, Kyrpides, Nikos C., Woyke, Tanja, Glavina del Rio, Tijana, DeAngelis, Kristen
Publicado 2019