Glycan-related genes in human gut microbiota exhibit differential distribution and diversity in carbohydrate degradation and glycan synthesis

por Takihara, Hayato, Okuda, Shujiro
Publicado 2023

Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis

por Yoshizaki, Hisayoshi, Okuda, Shujiro
Publicado 2014

Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome

por Yoshizaki, Hisayoshi, Okuda, Shujiro
Publicado 2015

Novel gene fusions found in cervical cancer

por Ling, Yiwei, Okuda, Shujiro
Publicado 2018

Knowledge base toward understanding actionable alterations and realizing precision oncology

por Takeuchi, Shiho, Okuda, Shujiro
Publicado 2018

Evolutionary analysis of proline-directed phosphorylation sites in the mammalian growth cone identified using phosphoproteomics

por Igarashi, Michihiro, Okuda, Shujiro
Publicado 2019

Current progress and critical challenges to overcome in the bioinformatics of mass spectrometry-based metaproteomics

por Miura, Nobuaki, Okuda, Shujiro
Publicado 2023

ODB: a database for operon organizations, 2011 update

por Okuda, Shujiro, Yoshizawa, Akiyasu C.
Publicado 2011

The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks

por Ling, Yiwei, Watanabe, Yu, Okuda, Shujiro
Publicado 2019

Deep learning classification of urinary sediment crystals with optimal parameter tuning

por Nagai, Takahiro, Onodera, Osamu, Okuda, Shujiro
Publicado 2022

ODB: a database of operons accumulating known operons across multiple genomes

por Okuda, Shujiro, Katayama, Toshiaki, Kawashima, Shuichi, Goto, Susumu, Kanehisa, Minoru
Publicado 2006

iPath2.0: interactive pathway explorer

por Yamada, Takuji, Letunic, Ivica, Okuda, Shujiro, Kanehisa, Minoru, Bork, Peer
Publicado 2011

GlycoPOST realizes FAIR principles for glycomics mass spectrometry data

por Watanabe, Yu, Aoki-Kinoshita, Kiyoko F, Ishihama, Yasushi, Okuda, Shujiro
Publicado 2020

Functional glyco-metagenomics elucidates the role of glycan-related genes in environments

por Takihara, Hayato, Miura, Nobuaki, Aoki-Kinoshita, Kiyoko F., Okuda, Shujiro
Publicado 2021

KAAS: an automatic genome annotation and pathway reconstruction server

por Moriya, Yuki, Itoh, Masumi, Okuda, Shujiro, Yoshizawa, Akiyasu C., Kanehisa, Minoru
Publicado 2007

Impact of Heavy Snowfall on Emergency Transport and Prognosis of Out-of-Hospital Cardiac Arrest Patients: A Nation-Wide Cohort Study

por Omatsu, Kentaro, Uchiyama, Mieko, Shimizu, Utako, Ling, Yiwei, Okuda, Shujiro, Koyama, Yu
Publicado 2023

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

por Okuda, Shujiro, Kawashima, Shuichi, Kobayashi, Kazuo, Ogasawara, Naotake, Kanehisa, Minoru, Goto, Susumu
Publicado 2007

Enhanced Translocation and Growth of Rhodococcus erythropolis PR4 in the Alkane Phase of Aqueous-Alkane Two Phase Cultures Were Mediated by GroEL2 Overexpression

por Takihara, Hayato, Ogihara, Jun, Yoshida, Takao, Okuda, Shujiro, Nakajima, Mutsuyasu, Iwabuchi, Noriyuki, Sunairi, Michio
Publicado 2014

Next generation sequencing‐based gene panel tests for the management of solid tumors

por Nagahashi, Masayuki, Shimada, Yoshifumi, Ichikawa, Hiroshi, Kameyama, Hitoshi, Takabe, Kazuaki, Okuda, Shujiro, Wakai, Toshifumi
Publicado 2018

Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer

por Ling, Yiwei, Watanabe, Yu, Nagahashi, Mayuki, Shimada, Yoshifumi, Ichikawa, Hiroshi, Wakai, Toshifumi, Okuda, Shujiro
Publicado 2020