Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method

por Zhang, Ren, Ou, Hong-Yu, Gao, Feng, Luo, Hao
Publicado 2014

PSP: rapid identification of orthologous coding genes under positive selection across multiple closely related prokaryotic genomes

por Su, Fei, Ou, Hong-Yu, Tao, Fei, Tang, Hongzhi, Xu, Ping
Publicado 2013

ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes

por Chen, Ling-Ling, Ou, Hong-Yu, Zhang, Ren, Zhang, Chun-Ting
Publicado 2003

The dnd operon for DNA phosphorothioation modification system in Escherichia coli is located in diverse genomic islands

por Ho, Wing Sze, Ou, Hong-Yu, Yeo, Chew Chieng, Thong, Kwai Lin
Publicado 2015

dndDB: A Database Focused on Phosphorothioation of the DNA Backbone

por Ou, Hong-Yu, He, Xinyi, Shao, Yucheng, Tai, Cui, Rajakumar, Kumar, Deng, Zixin
Publicado 2009

SecReT4: a web-based bacterial type IV secretion system resource

por Bi, Dexi, Liu, Linmeng, Tai, Cui, Deng, Zixin, Rajakumar, Kumar, Ou, Hong-Yu
Publicado 2013

Genetic diversity and evolution of the virulence plasmids encoding aerobactin and salmochelin in Klebsiella pneumoniae

por Tian, Dongxing, Wang, Meng, Zhou, Ying, Hu, Dakang, Ou, Hong-Yu, Jiang, Xiaofei
Publicado 2021

Identification and characterization of chromosomal relBE toxin-antitoxin locus in Streptomyces cattleya DSM46488

por Li, Peng, Tai, Cui, Deng, Zixin, Gan, Jianhua, Oggioni, Marco R., Ou, Hong-Yu
Publicado 2016

Coronavirus phylogeny based on a geometric approach

por Zheng, Wen-Xin, Chen, Ling-Ling, Ou, Hong-Yu, Gao, Feng, Zhang, Chun-Ting
Publicado 2005

VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens

por Wang, Meng, Goh, Ying-Xian, Tai, Cui, Wang, Hui, Deng, Zixin, Ou, Hong-Yu
Publicado 2022

CpxR promotes the carbapenem antibiotic resistance of Klebsiella pneumoniae by directly regulating the expression and the dissemination of bla(KPC) on the IncFII conjugative plasmi...

por Liu, Zhiyuan, Guan, Jiahao, Chen, Zhaoyan, Tai, Cui, Deng, Zixin, Chao, Yanjie, Ou, Hong-Yu
Publicado 2023

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements

por Li, Xiaobin, Xie, Yingzhou, Liu, Meng, Tai, Cui, Sun, Jingyong, Deng, Zixin, Ou, Hong-Yu
Publicado 2018

mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes

por Shao, Yucheng, He, Xinyi, Harrison, Ewan M., Tai, Cui, Ou, Hong-Yu, Rajakumar, Kumar, Deng, Zixin
Publicado 2010

Identification and Characterization of an Antibacterial Type VI Secretion System in the Carbapenem-Resistant Strain Klebsiella pneumoniae HS11286

por Liu, Lu, Ye, Meiping, Li, Xiaobin, Li, Jun, Deng, Zixin, Yao, Yu-Feng, Ou, Hong-Yu
Publicado 2017

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

por Wu, Da-Qiang, Ye, Jing, Ou, Hong-Yu, Wei, Xue, Huang, Xianqing, He, Ya-Wen, Xu, Yuquan
Publicado 2011

TADB 2.0: an updated database of bacterial type II toxin–antitoxin loci

por Xie, Yingzhou, Wei, Yiqing, Shen, Yue, Li, Xiaobin, Zhou, Hao, Tai, Cui, Deng, Zixin, Ou, Hong-Yu
Publicado 2018

Comparative Analysis of AbaR-Type Genomic Islands Reveals Distinct Patterns of Genetic Features in Elements with Different Backbones

por Bi, Dexi, Zheng, Jiayi, Xie, Ruting, Zhu, Yin, Wei, Rong, Ou, Hong-Yu, Wei, Qing, Qin, Huanlong
Publicado 2020

ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements

por Liu, Meng, Liu, Jialin, Liu, Guitian, Wang, Hui, Wang, Xiaoli, Deng, Zixin, He, Yongqun, Ou, Hong-Yu
Publicado 2022

DeepSecE: A Deep-Learning-Based Framework for Multiclass Prediction of Secreted Proteins in Gram-Negative Bacteria

por Zhang, Yumeng, Guan, Jiahao, Li, Chen, Wang, Zhikang, Deng, Zixin, Gasser, Robin B., Song, Jiangning, Ou, Hong-Yu
Publicado 2023

Correction: sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

por Sridhar, Jayavel, Sambaturu, Narmada, Sabarinathan, Radhakrishna, Ou, Hong-Yu, Deng, Zixin, Sekar, Kanagaraj, Rafi, Ziauddin Ahamed, Rajakumar, Kumar
Publicado 2010