Statistical methods for quantitative mass spectrometry proteomic experiments with labeling

por Oberg, Ann L, Mahoney, Douglas W
Publicado 2012

Challenges and Opportunities in Clinical Applications of Blood-Based Proteomics in Cancer

por Bhawal, Ruchika, Oberg, Ann L., Zhang, Sheng, Kohli, Manish
Publicado 2020

Differential co-expression network centrality and machine learning feature selection for identifying susceptibility hubs in networks with scale-free structure

por Lareau, Caleb A, White, Bill C, Oberg, Ann L, McKinney, Brett A
Publicado 2015

Technical and biological variance structure in mRNA-Seq data: life in the real world

por Oberg, Ann L, Bot, Brian M, Grill, Diane E, Poland, Gregory A, Therneau, Terry M
Publicado 2012

Transcriptomic Profiles of High and Low Antibody Responders to Smallpox Vaccine

por Kennedy, Richard B., Oberg, Ann L., Ovsyannikova, Inna G., Haralambieva, Iana H., Grill, Diane, Poland, Gregory A.
Publicado 2013

Discovery of Ovarian Cancer Biomarkers in Serum Using NanoLC Electrospray Ionization TOF and FT-ICR Mass Spectrometry

por Bergen, H. Robert, Vasmatzis, George, Cliby, William A., Johnson, Kenneth L., Oberg, Ann L., Muddiman, David C.
Publicado 2004

Soft truncation thresholding for gene set analysis of RNA-seq data: Application to a vaccine study

por Fridley, Brooke L., Jenkins, Gregory D., Grill, Diane E., Kennedy, Richard B., Poland, Gregory A., Oberg, Ann L.
Publicado 2013

The Integration of Epistasis Network and Functional Interactions in a GWAS Implicates RXR Pathway Genes in the Immune Response to Smallpox Vaccine

por McKinney, Brett A., Lareau, Caleb, Oberg, Ann L., Kennedy, Richard B., Ovsyannikova, Inna G., Poland, Gregory A.
Publicado 2016

System-Wide Associations between DNA-Methylation, Gene Expression, and Humoral Immune Response to Influenza Vaccination

por Zimmermann, Michael T., Oberg, Ann L., Grill, Diane E., Ovsyannikova, Inna G., Haralambieva, Iana H., Kennedy, Richard B., Poland, Gregory A.
Publicado 2016

Whole Transcriptome Profiling Identifies CD93 and Other Plasma Cell Survival Factor Genes Associated with Measles-Specific Antibody Response after Vaccination

por Haralambieva, Iana H., Zimmermann, Michael T., Ovsyannikova, Inna G., Grill, Diane E., Oberg, Ann L., Kennedy, Richard B., Poland, Gregory A.
Publicado 2016

Immunosenescence-Related Transcriptomic and Immunologic Changes in Older Individuals Following Influenza Vaccination

por Kennedy, Richard B., Ovsyannikova, Inna G., Haralambieva, Iana H., Oberg, Ann L., Zimmermann, Michael T., Grill, Diane E., Poland, Gregory A.
Publicado 2016

RNA-seq: technical variability and sampling

por McIntyre, Lauren M, Lopiano, Kenneth K, Morse, Alison M, Amin, Victor, Oberg, Ann L, Young, Linda J, Nuzhdin, Sergey V
Publicado 2011

Overcoming platinum resistance in ovarian cancer by targeting pregnancy-associated plasma protein-A

por Torres, Diogo, Hou, Xiaonan, Bale, Laurie, Heinzen, Ethan P., Maurer, Matthew J., Zanfagnin, Valentina, Oberg, Ann L., Conover, Cheryl, Weroha, S. John
Publicado 2019

ReliefSeq: A Gene-Wise Adaptive-K Nearest-Neighbor Feature Selection Tool for Finding Gene-Gene Interactions and Main Effects in mRNA-Seq Gene Expression Data

por McKinney, Brett A., White, Bill C., Grill, Diane E., Li, Peter W., Kennedy, Richard B., Poland, Gregory A., Oberg, Ann L.
Publicado 2013

Recursive Indirect-Paths Modularity (RIP-M) for Detecting Community Structure in RNA-Seq Co-expression Networks

por Rahmani, Bahareh, Zimmermann, Michael T., Grill, Diane E., Kennedy, Richard B., Oberg, Ann L., White, Bill C., Poland, Gregory A., McKinney, Brett A.
Publicado 2016

Gene signatures related to HAI response following influenza A/H1N1 vaccine in older individuals

por Ovsyannikova, Inna G., Oberg, Ann L., Kennedy, Richard B., Zimmermann, Michael T., Haralambieva, Iana H., Goergen, Krista M., Grill, Diane E., Poland, Gregory A.
Publicado 2016

GENE SIGNATURES ASSOCIATED WITH ADAPTIVE HUMORAL IMMUNITY FOLLOWING SEASONAL INFLUENZA A/H1N1 VACCINATION

por Ovsyannikova, Inna G., Salk, Hannah M., Kennedy, Richard B., Haralambieva, Iana H., Zimmermann, Michael T., Grill, Diane E., Oberg, Ann L., Poland, Gregory A.
Publicado 2016

Integration of Immune Cell Populations, mRNA-Seq, and CpG Methylation to Better Predict Humoral Immunity to Influenza Vaccination: Dependence of mRNA-Seq/CpG Methylation on Immune...

por Zimmermann, Michael T., Kennedy, Richard B., Grill, Diane E., Oberg, Ann L., Goergen, Krista M., Ovsyannikova, Inna G., Haralambieva, Iana H., Poland, Gregory A.
Publicado 2017

Leukocyte DNA Methylation Signature Differentiates Pancreatic Cancer Patients from Healthy Controls

por Pedersen, Katrina S., Bamlet, William R., Oberg, Ann L., de Andrade, Mariza, Matsumoto, Martha E., Tang, Hui, Thibodeau, Stephen N., Petersen, Gloria M., Wang, Liang
Publicado 2011

The Ratios of CD8(+) T Cells to CD4(+)CD25(+) FOXP3(+) and FOXP3(-) T Cells Correlate with Poor Clinical Outcome in Human Serous Ovarian Cancer

por Preston, Claudia C., Maurer, Matthew J., Oberg, Ann L., Visscher, Daniel W., Kalli, Kimberly R., Hartmann, Lynn C., Goode, Ellen L., Knutson, Keith L.
Publicado 2013