Implications of Systemic Dysfunction for the Etiology of Malignancy

por Knox, Sarah S., Ochs, Michael F.
Publicado 2013

LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates

por Wang, Guoli, Kossenkov, Andrew V, Ochs, Michael F
Publicado 2006

Determination of strongly overlapping signaling activity from microarray data

por Bidaut, Ghislain, Suhre, Karsten, Claverie, Jean-Michel, Ochs, Michael F
Publicado 2006

Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development

por Fertig, Elana J., Danilova, Ludmila V., Favorov, Alexander V., Ochs, Michael F.
Publicado 2011

ZNF-Mediated Resistance to Imatinib Mesylate in Gastrointestinal Stromal Tumor

por Rink, Lori, Ochs, Michael F., Zhou, Yan, von Mehren, Margaret, Godwin, Andrew K.
Publicado 2013

Promoter Methylation in Head and Neck Squamous Cell Carcinoma Cell Lines Is Significantly Different than Methylation in Primary Tumors and Xenografts

por Hennessey, Patrick T., Ochs, Michael F., Mydlarz, Wojciech W., Hsueh, Wayne, Cope, Leslie, Yu, Wayne, Califano, Joseph A.
Publicado 2011

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

por Stansfield, John C., Rusay, Matthew, Shan, Roger, Kelton, Conor, Gaykalova, Daria A., Fertig, Elana J., Califano, Joseph A., Ochs, Michael F.
Publicado 2016

Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma

por Fertig, Elana J, Ren, Qing, Cheng, Haixia, Hatakeyama, Hiromitsu, Dicker, Adam P, Rodeck, Ulrich, Considine, Michael, Ochs, Michael F, Chung, Christine H
Publicado 2012

Preferential Activation of the Hedgehog Pathway by Epigenetic Modulations in HPV Negative HNSCC Identified with Meta-Pathway Analysis

por Fertig, Elana J., Markovic, Ana, Danilova, Ludmila V., Gaykalova, Daria A., Cope, Leslie, Chung, Christine H., Ochs, Michael F., Califano, Joseph A.
Publicado 2013

Serum microRNA Biomarkers for Detection of Non-Small Cell Lung Cancer

por Hennessey, Patrick T., Sanford, Tiffany, Choudhary, Ashish, Mydlarz, Wojciech W., Brown, David, Adai, Alex Tamas, Ochs, Michael F., Ahrendt, Steven A., Mambo, Elizabeth, Califano, Joseph A.
Publicado 2012

Correction: Serum microRNA Biomarkers for Detection of Non-Small Cell Lung Cancer

por Hennessey, Patrick T., Sanford, Tiffany, Choudhary, Ashish, Mydlarz, Wojciech W., Brown, David, Adai, Alex Tamas, Ochs, Michael F., Ahrendt, Steven A., Mambo, Elizabeth, Califano, Joseph A.
Publicado 2012

Integrative Discovery of Epigenetically Derepressed Cancer Testis Antigens in NSCLC

por Glazer, Chad A., Smith, Ian M., Ochs, Michael F., Begum, Shahnaz, Westra, William, Chang, Steven S., Sun, Wenyue, Bhan, Sheetal, Khan, Zubair, Ahrendt, Steven, Califano, Joseph A.
Publicado 2009

Three allele combinations associated with Multiple Sclerosis

por Favorova, Olga O, Favorov, Alexander V, Boiko, Alexey N, Andreewski, Timofey V, Sudomoina, Marina A, Alekseenkov, Alexey D, Kulakova, Olga G, Gusev, Eugenyi I, Parmigiani, Giovanni, Ochs, Michael F
Publicado 2006

MAGEB2 is Activated by Promoter Demethylation in Head and Neck Squamous Cell Carcinoma

por Pattani, Kavita M., Soudry, Ethan, Glazer, Chad A., Ochs, Michael F., Wang, Hao, Schussel, Juliana, Sun, Wenyue, Hennessey, Patrick, Mydlarz, Wojciech, Loyo, Myriam, Demokan, Semra, Smith, Ian M., Califano, Joseph A.
Publicado 2012

Expression Microarray Analysis Reveals Alternative Splicing of LAMA3 and DST Genes in Head and Neck Squamous Cell Carcinoma

por Li, Ryan, Ochs, Michael F., Ahn, Sun Mi, Hennessey, Patrick, Tan, Marietta, Soudry, Ethan, Gaykalova, Daria A., Uemura, Mamoru, Brait, Mariana, Shao, Chunbo, Westra, William, Bishop, Justin, Fertig, Elana J., Califano, Joseph A.
Publicado 2014

Enter the Matrix: Factorization Uncovers Knowledge from Omics

por Stein-O’Brien, Genevieve L., Arora, Raman, Culhane, Aedin C., Favorov, Alexander V., Garmire, Lana X., Greene, Casey S., Goff, Loyal A., Li, Yifeng, Ngom, Aloune, Ochs, Michael F., Xu, Yanxun, Fertig, Elana J.
Publicado 2018

Coordinated Activation of Candidate Proto-Oncogenes and Cancer Testes Antigens via Promoter Demethylation in Head and Neck Cancer and Lung Cancer

por Smith, Ian M., Glazer, Chad A., Mithani, Suhail K., Ochs, Michael F., Sun, Wenyue, Bhan, Sheetal, Vostrov, Alexander, Abdullaev, Ziedulla, Lobanenkov, Victor, Gray, Andrew, Liu, Chunyan, Chang, Steven S., Ostrow, Kimberly L., Westra, William H., Begum, Shahnaz, Dhara, Mousumi, Califano, Joseph
Publicado 2009

CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network

por Fertig, Elana J., Ozawa, Hiroyuki, Thakar, Manjusha, Howard, Jason D., Kagohara, Luciane T., Krigsfeld, Gabriel, Ranaweera, Ruchira S., Hughes, Robert M., Perez, Jimena, Jones, Siân, Favorov, Alexander V., Carey, Jacob, Stein-O'Brien, Genevieve, Gaykalova, Daria A., Ochs, Michael F., Chung, Christine H.
Publicado 2016

Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC

por Gaykalova, Daria A., Zizkova, Veronika, Guo, Theresa, Tiscareno, Ilse, Wei, Yingying, Vatapalli, Rajita, Hennessey, Patrick T., Ahn, Julie, Danilova, Ludmila, Khan, Zubair, Bishop, Justin A., Silvio Gutkind, J., Koch, Wayne M., Westra, William H., Fertig, Elana J., Ochs, Michael F., Califano, Joseph A.
Publicado 2017

A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)

por Patel, Ashokkumar A., Gilbertson, John R., Showe, Louise C., London, Jack W., Ross, Eric, Ochs, Michael F., Carver, Joseph, Lazarus, Andrea, Parwani, Anil V., Dhir, Rajiv, Beck, J. Robert, Liebman, Michael, Garcia, Fernando U., Prichard, Jeff, Wilkerson, Myra, Herberman, Ronald B., Becich, Michael J.
Publicado 2007