“Correcting” Gene Trees to be More Like Species Trees Frequently Increases Topological Error

por Yan, Zhi, Ogilvie, Huw A, Nakhleh, Luay
Publicado 2023

Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees

por Wang, Yaxuan, Ogilvie, Huw A, Nakhleh, Luay
Publicado 2020

Variational inference using approximate likelihood under the coalescent with recombination

por Liu, Xinhao, Ogilvie, Huw A., Nakhleh, Luay
Publicado 2021

Annotation-free delineation of prokaryotic homology groups

por Yin, Yongze, Ogilvie, Huw A., Nakhleh, Luay
Publicado 2022

Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes

por Ogilvie, Huw A, Imin, Nijat, Djordjevic, Michael A
Publicado 2014

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

por Ogilvie, Huw A., Bouckaert, Remco R., Drummond, Alexei J.
Publicado 2017

Phylogenomic assessment of the role of hybridization and introgression in trait evolution

por Wang, Yaxuan, Cao, Zhen, Ogilvie, Huw A., Nakhleh, Luay
Publicado 2021

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

por Ogilvie, Huw A., Heled, Joseph, Xie, Dong, Drummond, Alexei J.
Publicado 2016

Bayesian Inference of Species Networks from Multilocus Sequence Data

por Zhang, Chi, Ogilvie, Huw A, Drummond, Alexei J, Stadler, Tanja
Publicado 2018

A divide-and-conquer method for scalable phylogenetic network inference from multilocus data

por Zhu, Jiafan, Liu, Xinhao, Ogilvie, Huw A, Nakhleh, Luay K
Publicado 2019

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology

por Afonso Silva, Ana C., Santos, Natali, Ogilvie, Huw A., Moritz, Craig
Publicado 2017

Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes

por Yan, Zhi, Cao, Zhen, Liu, Yushu, Ogilvie, Huw A, Nakhleh, Luay
Publicado 2021

CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth

por Chapman, Kelly, Taleski, Michael, Ogilvie, Huw A, Imin, Nijat, Djordjevic, Michael A
Publicado 2019

Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

por Ogilvie, Huw A, Mendes, Fábio K, Vaughan, Timothy G, Matzke, Nicholas J, Stadler, Tanja, Welch, David, Drummond, Alexei J
Publicado 2021

Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data

por Edrisi, Mohammadamin, Valecha, Monica V, Chowdary, Sunkara B V, Robledo, Sergio, Ogilvie, Huw A, Posada, David, Zafar, Hamim, Nakhleh, Luay
Publicado 2022

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

por Sapoval, Nicolae, Mahmoud, Medhat, Jochum, Michael D., Liu, Yunxi, Elworth, R.A. Leo, Wang, Qi, Albin, Dreycey, Ogilvie, Huw A., Lee, Michael D., Villapol, Sonia, Hernandez, Kyle M., Maljkovic Berry, Irina, Foox, Jonathan, Beheshti, Afshin, Ternus, Krista, Aagaard, Kjersti M., Posada, David, Mason, Christopher E., Sedlazeck, Fritz J., Treangen, Todd J.
Publicado 2021

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

por Bouckaert, Remco, Vaughan, Timothy G., Barido-Sottani, Joëlle, Duchêne, Sebastián, Fourment, Mathieu, Gavryushkina, Alexandra, Heled, Joseph, Jones, Graham, Kühnert, Denise, De Maio, Nicola, Matschiner, Michael, Mendes, Fábio K., Müller, Nicola F., Ogilvie, Huw A., du Plessis, Louis, Popinga, Alex, Rambaut, Andrew, Rasmussen, David, Siveroni, Igor, Suchard, Marc A., Wu, Chieh-Hsi, Xie, Dong, Zhang, Chi, Stadler, Tanja, Drummond, Alexei J.
Publicado 2019