Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive

por Nakazato, Takeru, Ohta, Tazro, Bono, Hidemasa
Publicado 2013

Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive

por Ohta, Tazro, Nakazato, Takeru, Bono, Hidemasa
Publicado 2017

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

por Ohta, Tazro, Tanjo, Tomoya, Ogasawara, Osamu
Publicado 2019

A workflow reproducibility scale for automatic validation of biological interpretation results

por Suetake, Hirotaka, Fukusato, Tsukasa, Igarashi, Takeo, Ohta, Tazro
Publicado 2023

Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data

por Kawakami, Eiryo, Nakaoka, Shinji, Ohta, Tazro, Kitano, Hiroaki
Publicado 2016

ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data

por Zou, Zhaonan, Ohta, Tazro, Miura, Fumihito, Oki, Shinya
Publicado 2022

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

por Suetake, Hirotaka, Fukusato, Tsukasa, Igarashi, Takeo, Ohta, Tazro
Publicado 2023

ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data

por Oki, Shinya, Ohta, Tazro, Shioi, Go, Hatanaka, Hideki, Ogasawara, Osamu, Okuda, Yoshihiro, Kawaji, Hideya, Nakaki, Ryo, Sese, Jun, Meno, Chikara
Publicado 2018

TogoID: an exploratory ID converter to bridge biological datasets

por Ikeda, Shuya, Ono, Hiromasa, Ohta, Tazro, Chiba, Hirokazu, Naito, Yuki, Moriya, Yuki, Kawashima, Shuichi, Yamamoto, Yasunori, Okamoto, Shinobu, Goto, Susumu, Katayama, Toshiaki
Publicado 2022

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

por Mochizuki, Takako, Tanizawa, Yasuhiro, Fujisawa, Takatomo, Ohta, Tazro, Nikoh, Naruo, Shimizu, Tokurou, Toyoda, Atsushi, Fujiyama, Asao, Kurata, Nori, Nagasaki, Hideki, Kaminuma, Eli, Nakamura, Yasukazu
Publicado 2017

GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation

por Terao, Chikashi, Momozawa, Yukihide, Ishigaki, Kazuyoshi, Kawakami, Eiryo, Akiyama, Masato, Loh, Po-Ru, Genovese, Giulio, Sugishita, Hiroki, Ohta, Tazro, Hirata, Makoto, Perry, John R. B., Matsuda, Koichi, Murakami, Yoshinori, Kubo, Michiaki, Kamatani, Yoichiro
Publicado 2019

Squalomix: shark and ray genome analysis consortium and its data sharing platform

por Nishimura, Osamu, Rozewicki, John, Yamaguchi, Kazuaki, Tatsumi, Kaori, Ohishi, Yuta, Ohta, Tazro, Yagura, Masaru, Niwa, Taiki, Tanegashima, Chiharu, Teramura, Akinori, Hirase, Shotaro, Kawaguchi, Akane, Tan, Milton, D'Aniello, Salvatore, Castro, Filipe, Machado, André, Koyanagi, Mitsumasa, Terakita, Akihisa, Misawa, Ryo, Horie, Masayuki, Kawasaki, Junna, Asahida, Takashi, Yamaguchi, Atsuko, Murakumo, Kiyomi, Matsumoto, Rui, Irisarri, Iker, Miyamoto, Norio, Toyoda, Atsushi, Tanaka, Sho, Sakamoto, Tatsuya, Semba, Yasuko, Yamauchi, Shinya, Yamada, Kazuyuki, Nishida, Kiyonori, Kiyatake, Itsuki, Sato, Keiichi, Hyodo, Susumu, Kadota, Mitsutaka, Uno, Yoshinobu, Kuraku, Shigehiro
Publicado 2022

BioHackathon 2015: Semantics of data for life sciences and reproducible research

por Vos, Rutger A., Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P., Arakawa, Kazuharu, Bolleman, Jerven T., Bolton, Evan, Bonnal, Raoul J. P., Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B., Deutsch, Eric W., Fernández-Breis, Jesualdo T., Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R., Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C., Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa
Publicado 2020