The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

por Jain, Miten, Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Publicado 2016

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

por Jain, Miten, Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Publicado 2016

Improved data analysis for the MinION nanopore sequencer

por Jain, Miten, Fiddes, Ian, Miga, Karen H., Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Publicado 2015

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

por Thomas, Niki K., Poodari, Vinay C., Jain, Miten, Olsen, Hugh E., Akeson, Mark, Abu-Shumays, Robin L.
Publicado 2021

MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome

por Tyson, John R., O'Neil, Nigel J., Jain, Miten, Olsen, Hugh E., Hieter, Philip, Snutch, Terrance P.
Publicado 2018

Mapping DNA Methylation with High Throughput Nanopore Sequencing

por Rand, Arthur C., Jain, Miten, Eizenga, Jordan M., Musselman-Brown, Audrey, Olsen, Hugh E., Akeson, Mark, Paten, Benedict
Publicado 2017

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells

por Byrne, Ashley, Beaudin, Anna E., Olsen, Hugh E., Jain, Miten, Cole, Charles, Palmer, Theron, DuBois, Rebecca M., Forsberg, E. Camilla, Akeson, Mark, Vollmers, Christopher
Publicado 2017

Linear assembly of a human centromere on the Y chromosome

por Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H
Publicado 2018

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

por Jain, Miten, Tyson, John R., Loose, Matthew, Ip, Camilla L.C., Eccles, David A., O'Grady, Justin, Malla, Sunir, Leggett, Richard M., Wallerman, Ola, Jansen, Hans J., Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L., Snutch, Terrance P., Olsen, Hugh E.
Publicado 2017

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

por Liu, S. John, Malatesta, Martina, Lien, Brian V., Saha, Parna, Thombare, Shivani S., Hong, Sung Jun, Pedraza, Leslie, Koontz, Mark, Seo, Kyounghee, Horlbeck, Max A., He, Daniel, Birk, Harjus S., Jain, Miten, Olsen, Hugh E., Akeson, Mark, Weissman, Jonathan S., Monje, Michelle, Gupta, Nalin, Raleigh, David R., Ullian, Erik M., Lim, Daniel A.
Publicado 2020

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

por Thornlow, Bryan, Hinrichs, Angie S., Jain, Miten, Dhillon, Namrita, La, Scott, Kapp, Joshua D., Anigbogu, Ikenna, Cassatt-Johnstone, Molly, McBroome, Jakob, Haeussler, Maximilian, Turakhia, Yatish, Chang, Terren, Olsen, Hugh E, Sanford, Jeremy, Stone, Michael, Vaske, Olena, Bjork, Isabel, Akeson, Mark, Shapiro, Beth, Haussler, David, Kilpatrick, A. Marm, Corbett-Detig, Russell
Publicado 2021

Nanopore native RNA sequencing of a human poly(A) transcriptome

por Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston
Publicado 2019

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

por Ip, Camilla L.C., Loose, Matthew, Tyson, John R., de Cesare, Mariateresa, Brown, Bonnie L., Jain, Miten, Leggett, Richard M., Eccles, David A., Zalunin, Vadim, Urban, John M., Piazza, Paolo, Bowden, Rory J., Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M., Simpson, Jared T., Snutch, Terrance P., Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J., O'Grady, Justin, Olsen, Hugh E.
Publicado 2015

Nanopore sequencing and assembly of a human genome with ultra-long reads

por Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Publicado 2018

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

por Shafin, Kishwar, Pesout, Trevor, Lorig-Roach, Ryan, Haukness, Marina, Olsen, Hugh E., Bosworth, Colleen, Armstrong, Joel, Tigyi, Kristof, Maurer, Nicholas, Koren, Sergey, Sedlazeck, Fritz J., Marschall, Tobias, Mayes, Simon, Costa, Vania, Zook, Justin M., Liu, Kelvin J., Kilburn, Duncan, Sorensen, Melanie, Munson, Katy M., Vollger, Mitchell R., Monlong, Jean, Garrison, Erik, Eichler, Evan E., Salama, Sofie, Haussler, David, Green, Richard E., Akeson, Mark, Phillippy, Adam, Miga, Karen H., Carnevali, Paolo, Jain, Miten, Paten, Benedict
Publicado 2020

Semi-automated assembly of high-quality diploid human reference genomes

por Jarvis, Erich D., Formenti, Giulio, Rhie, Arang, Guarracino, Andrea, Yang, Chentao, Wood, Jonathan, Tracey, Alan, Thibaud-Nissen, Francoise, Vollger, Mitchell R., Porubsky, David, Cheng, Haoyu, Asri, Mobin, Logsdon, Glennis A., Carnevali, Paolo, Chaisson, Mark J. P., Chin, Chen-Shan, Cody, Sarah, Collins, Joanna, Ebert, Peter, Escalona, Merly, Fedrigo, Olivier, Fulton, Robert S., Fulton, Lucinda L., Garg, Shilpa, Gerton, Jennifer L., Ghurye, Jay, Granat, Anastasiya, Green, Richard E., Harvey, William, Hasenfeld, Patrick, Hastie, Alex, Haukness, Marina, Jaeger, Erich B., Jain, Miten, Kirsche, Melanie, Kolmogorov, Mikhail, Korbel, Jan O., Koren, Sergey, Korlach, Jonas, Lee, Joyce, Li, Daofeng, Lindsay, Tina, Lucas, Julian, Luo, Feng, Marschall, Tobias, Mitchell, Matthew W., McDaniel, Jennifer, Nie, Fan, Olsen, Hugh E., Olson, Nathan D., Pesout, Trevor, Potapova, Tamara, Puiu, Daniela, Regier, Allison, Ruan, Jue, Salzberg, Steven L., Sanders, Ashley D., Schatz, Michael C., Schmitt, Anthony, Schneider, Valerie A., Selvaraj, Siddarth, Shafin, Kishwar, Shumate, Alaina, Stitziel, Nathan O., Stober, Catherine, Torrance, James, Wagner, Justin, Wang, Jianxin, Wenger, Aaron, Xiao, Chuanle, Zimin, Aleksey V., Zhang, Guojie, Wang, Ting, Li, Heng, Garrison, Erik, Haussler, David, Hall, Ira, Zook, Justin M., Eichler, Evan E., Phillippy, Adam M., Paten, Benedict, Howe, Kerstin, Miga, Karen H.
Publicado 2022

A draft human pangenome reference

por Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Sirén, Jouni, Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cook-Deegan, Robert M., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Garrison, Nanibaa’ A., Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kenny, Eimear E., Koenig, Barbara A., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Koren, Sergey, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McCartney, Ann, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Nurk, Sergey, Olson, Nathan D., Popejoy, Alice B., Puiu, Daniela, Rautiainen, Mikko, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Walenz, Brian, Wood, Jonathan M. D., Zimin, Aleksey V., Bourque, Guillaume, Chaisson, Mark J. P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Wang, Ting, Jarvis, Erich D., Miga, Karen H., Garrison, Erik, Marschall, Tobias, Hall, Ira M., Li, Heng, Paten, Benedict
Publicado 2023