The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

ανά Jain, Miten, Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Έκδοση 2016

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

ανά Jain, Miten, Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Έκδοση 2016

Improved data analysis for the MinION nanopore sequencer

ανά Jain, Miten, Fiddes, Ian, Miga, Karen H., Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Έκδοση 2015

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

ανά Thomas, Niki K., Poodari, Vinay C., Jain, Miten, Olsen, Hugh E., Akeson, Mark, Abu-Shumays, Robin L.
Έκδοση 2021

MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome

ανά Tyson, John R., O'Neil, Nigel J., Jain, Miten, Olsen, Hugh E., Hieter, Philip, Snutch, Terrance P.
Έκδοση 2018

Mapping DNA Methylation with High Throughput Nanopore Sequencing

ανά Rand, Arthur C., Jain, Miten, Eizenga, Jordan M., Musselman-Brown, Audrey, Olsen, Hugh E., Akeson, Mark, Paten, Benedict
Έκδοση 2017

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells

ανά Byrne, Ashley, Beaudin, Anna E., Olsen, Hugh E., Jain, Miten, Cole, Charles, Palmer, Theron, DuBois, Rebecca M., Forsberg, E. Camilla, Akeson, Mark, Vollmers, Christopher
Έκδοση 2017

Linear assembly of a human centromere on the Y chromosome

ανά Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H
Έκδοση 2018

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

ανά Jain, Miten, Tyson, John R., Loose, Matthew, Ip, Camilla L.C., Eccles, David A., O'Grady, Justin, Malla, Sunir, Leggett, Richard M., Wallerman, Ola, Jansen, Hans J., Zalunin, Vadim, Birney, Ewan, Brown, Bonnie L., Snutch, Terrance P., Olsen, Hugh E.
Έκδοση 2017

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

ανά Liu, S. John, Malatesta, Martina, Lien, Brian V., Saha, Parna, Thombare, Shivani S., Hong, Sung Jun, Pedraza, Leslie, Koontz, Mark, Seo, Kyounghee, Horlbeck, Max A., He, Daniel, Birk, Harjus S., Jain, Miten, Olsen, Hugh E., Akeson, Mark, Weissman, Jonathan S., Monje, Michelle, Gupta, Nalin, Raleigh, David R., Ullian, Erik M., Lim, Daniel A.
Έκδοση 2020

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

ανά Thornlow, Bryan, Hinrichs, Angie S., Jain, Miten, Dhillon, Namrita, La, Scott, Kapp, Joshua D., Anigbogu, Ikenna, Cassatt-Johnstone, Molly, McBroome, Jakob, Haeussler, Maximilian, Turakhia, Yatish, Chang, Terren, Olsen, Hugh E, Sanford, Jeremy, Stone, Michael, Vaske, Olena, Bjork, Isabel, Akeson, Mark, Shapiro, Beth, Haussler, David, Kilpatrick, A. Marm, Corbett-Detig, Russell
Έκδοση 2021

Nanopore native RNA sequencing of a human poly(A) transcriptome

ανά Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston
Έκδοση 2019

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

ανά Ip, Camilla L.C., Loose, Matthew, Tyson, John R., de Cesare, Mariateresa, Brown, Bonnie L., Jain, Miten, Leggett, Richard M., Eccles, David A., Zalunin, Vadim, Urban, John M., Piazza, Paolo, Bowden, Rory J., Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M., Simpson, Jared T., Snutch, Terrance P., Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J., O'Grady, Justin, Olsen, Hugh E.
Έκδοση 2015

Nanopore sequencing and assembly of a human genome with ultra-long reads

ανά Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Έκδοση 2018

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

ανά Shafin, Kishwar, Pesout, Trevor, Lorig-Roach, Ryan, Haukness, Marina, Olsen, Hugh E., Bosworth, Colleen, Armstrong, Joel, Tigyi, Kristof, Maurer, Nicholas, Koren, Sergey, Sedlazeck, Fritz J., Marschall, Tobias, Mayes, Simon, Costa, Vania, Zook, Justin M., Liu, Kelvin J., Kilburn, Duncan, Sorensen, Melanie, Munson, Katy M., Vollger, Mitchell R., Monlong, Jean, Garrison, Erik, Eichler, Evan E., Salama, Sofie, Haussler, David, Green, Richard E., Akeson, Mark, Phillippy, Adam, Miga, Karen H., Carnevali, Paolo, Jain, Miten, Paten, Benedict
Έκδοση 2020

Semi-automated assembly of high-quality diploid human reference genomes

ανά Jarvis, Erich D., Formenti, Giulio, Rhie, Arang, Guarracino, Andrea, Yang, Chentao, Wood, Jonathan, Tracey, Alan, Thibaud-Nissen, Francoise, Vollger, Mitchell R., Porubsky, David, Cheng, Haoyu, Asri, Mobin, Logsdon, Glennis A., Carnevali, Paolo, Chaisson, Mark J. P., Chin, Chen-Shan, Cody, Sarah, Collins, Joanna, Ebert, Peter, Escalona, Merly, Fedrigo, Olivier, Fulton, Robert S., Fulton, Lucinda L., Garg, Shilpa, Gerton, Jennifer L., Ghurye, Jay, Granat, Anastasiya, Green, Richard E., Harvey, William, Hasenfeld, Patrick, Hastie, Alex, Haukness, Marina, Jaeger, Erich B., Jain, Miten, Kirsche, Melanie, Kolmogorov, Mikhail, Korbel, Jan O., Koren, Sergey, Korlach, Jonas, Lee, Joyce, Li, Daofeng, Lindsay, Tina, Lucas, Julian, Luo, Feng, Marschall, Tobias, Mitchell, Matthew W., McDaniel, Jennifer, Nie, Fan, Olsen, Hugh E., Olson, Nathan D., Pesout, Trevor, Potapova, Tamara, Puiu, Daniela, Regier, Allison, Ruan, Jue, Salzberg, Steven L., Sanders, Ashley D., Schatz, Michael C., Schmitt, Anthony, Schneider, Valerie A., Selvaraj, Siddarth, Shafin, Kishwar, Shumate, Alaina, Stitziel, Nathan O., Stober, Catherine, Torrance, James, Wagner, Justin, Wang, Jianxin, Wenger, Aaron, Xiao, Chuanle, Zimin, Aleksey V., Zhang, Guojie, Wang, Ting, Li, Heng, Garrison, Erik, Haussler, David, Hall, Ira, Zook, Justin M., Eichler, Evan E., Phillippy, Adam M., Paten, Benedict, Howe, Kerstin, Miga, Karen H.
Έκδοση 2022

A draft human pangenome reference

ανά Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Sirén, Jouni, Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cook-Deegan, Robert M., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Garrison, Nanibaa’ A., Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kenny, Eimear E., Koenig, Barbara A., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Koren, Sergey, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McCartney, Ann, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Nurk, Sergey, Olson, Nathan D., Popejoy, Alice B., Puiu, Daniela, Rautiainen, Mikko, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Walenz, Brian, Wood, Jonathan M. D., Zimin, Aleksey V., Bourque, Guillaume, Chaisson, Mark J. P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Wang, Ting, Jarvis, Erich D., Miga, Karen H., Garrison, Erik, Marschall, Tobias, Hall, Ira M., Li, Heng, Paten, Benedict
Έκδοση 2023