POOL server: machine learning application for functional site prediction in proteins

por Somarowthu, Srinivas, Ondrechen, Mary Jo
Publicado 2012

Biochemical functional predictions for protein structures of unknown or uncertain function

por Mills, Caitlyn L., Beuning, Penny J., Ondrechen, Mary Jo
Publicado 2015

Identification of Functional Subclasses in the DJ-1 Superfamily Proteins

por Wei, Ying, Ringe, Dagmar, Wilson, Mark A, Ondrechen, Mary Jo
Publicado 2007

Selective prediction of interaction sites in protein structures with THEMATICS

por Wei, Ying, Ko, Jaeju, Murga, Leonel F, Ondrechen, Mary Jo
Publicado 2007

Analysis of electrostatic coupling throughout the laboratory evolution of a designed retroaldolase

por Coulther, Timothy A., Pott, Moritz, Zeymer, Cathleen, Hilvert, Donald, Ondrechen, Mary Jo
Publicado 2021

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties

por Tong, Wenxu, Wei, Ying, Murga, Leonel F., Ondrechen, Mary Jo, Williams, Ronald J.
Publicado 2009

Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)

por Wang, Zhouxi, Yin, Pengcheng, Lee, Joslynn S, Parasuram, Ramya, Somarowthu, Srinivas, Ondrechen, Mary Jo
Publicado 2013

Stereoselective Synthesis of β-Glycinamide Ribonucleotide

por Ngu, Lisa, Ray, Debarpita, Watson, Samantha S., Beuning, Penny J., Ondrechen, Mary Jo, O’Doherty, George A.
Publicado 2022

Functional classification of protein structures by local structure matching in graph representation

por Mills, Caitlyn L., Garg, Rohan, Lee, Joslynn S., Tian, Liang, Suciu, Alexandru, Cooperman, Gene D., Beuning, Penny J., Ondrechen, Mary Jo
Publicado 2018

Identification and characterization of alternative sites and molecular probes for SARS-CoV-2 target proteins

por Iyengar, Suhasini M., Barnsley, Kelly K., Vu, Hoang Yen, Bongalonta, Ian Jef A., Herrod, Alyssa S., Scott, Jasmine A., Ondrechen, Mary Jo
Publicado 2022

Prediction of distal residue participation in enzyme catalysis

por Brodkin, Heather R, DeLateur, Nicholas A, Somarowthu, Srinivas, Mills, Caitlyn L, Novak, Walter R, Beuning, Penny J, Ringe, Dagmar, Ondrechen, Mary Jo
Publicado 2015

Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase

por Ngu, Lisa, Winters, Jenifer N., Nguyen, Kien, Ramos, Kevin E., DeLateur, Nicholas A., Makowski, Lee, Whitford, Paul C., Ondrechen, Mary Jo, Beuning, Penny J.
Publicado 2020

Fluorinated Adenosine A(2A) Receptor Antagonists Inspired by Preladenant as Potential Cancer Immunotherapeutics

por Yuan, Gengyang, Jankins, Tanner C., Patrick, Christopher G., Philbrook, Phaethon, Sears, Olivia, Hatfield, Stephen, Sitkovsky, Michail, Vasdev, Neil, Liang, Steven H., Ondrechen, Mary Jo, Pollastri, Michael P., Jones, Graham B.
Publicado 2017

Virtually the Same? Evaluating the Effectiveness of Remote Undergraduate Research Experiences

por Hess, Riley A., Erickson, Olivia A., Cole, Rebecca B., Isaacs, Jared M., Alvarez-Clare, Silvia, Arnold, Jonathan, Augustus-Wallace, Allison, Ayoob, Joseph C., Berkowitz, Alan, Branchaw, Janet, Burgio, Kevin R., Cannon, Charles H., Ceballos, Ruben Michael, Cohen, C. Sarah, Coller, Hilary, Disney, Jane, Doze, Van A., Eggers, Margaret J., Ferguson, Edwin L., Gray, Jeffrey J., Greenberg, Jean T., Hoffmann, Alexander, Jensen-Ryan, Danielle, Kao, Robert M., Keene, Alex C., Kowalko, Johanna E., Lopez, Steven A., Mathis, Camille, Minkara, Mona, Murren, Courtney J., Ondrechen, Mary Jo, Ordoñez, Patricia, Osano, Anne, Padilla-Crespo, Elizabeth, Palchoudhury, Soubantika, Qin, Hong, Ramírez-Lugo, Juan, Reithel, Jennifer, Shaw, Colin A., Smith, Amber, Smith, Rosemary J., Tsien, Fern, Dolan, Erin L.
Publicado 2023

“How Do We Do This at a Distance?!” A Descriptive Study of Remote Undergraduate Research Programs during COVID-19

por Erickson, Olivia A., Cole, Rebecca B., Isaacs, Jared M., Alvarez-Clare, Silvia, Arnold, Jonathan, Augustus-Wallace, Allison, Ayoob, Joseph C., Berkowitz, Alan, Branchaw, Janet, Burgio, Kevin R., Cannon, Charles H., Ceballos, Ruben Michael, Cohen, C. Sarah, Coller, Hilary, Disney, Jane, Doze, Van A., Eggers, Margaret J., Farina, Stacy, Ferguson, Edwin L., Gray, Jeffrey J., Greenberg, Jean T., Hoffmann, Alexander, Jensen-Ryan, Danielle, Kao, Robert M., Keene, Alex C., Kowalko, Johanna E., Lopez, Steven A., Mathis, Camille, Minkara, Mona, Murren, Courtney J., Ondrechen, Mary Jo, Ordoñez, Patricia, Osano, Anne, Padilla-Crespo, Elizabeth, Palchoudhury, Soubantika, Qin, Hong, Ramírez-Lugo, Juan, Reithel, Jennifer, Shaw, Colin A., Smith, Amber, Smith, Rosemary, Summers, Adam P., Tsien, Fern, Dolan, Erin L.
Publicado 2022