Coevolution Trumps Pleiotropy: Carbon Assimilation Traits Are Independent of Metabolic Network Structure in Budding Yeast

por Opulente, Dana A., Morales, Christopher M., Carey, Lucas B., Rest, Joshua S.
Publicado 2013

Mitochondrial Genome Diversity across the Subphylum Saccharomycotina

por Wolters, John F., LaBella, Abigail L., Opulente, Dana A., Rokas, Antonis, Hittinger, Chris Todd
Publicado 2023

Variation and selection on codon usage bias across an entire subphylum

por LaBella, Abigail L., Opulente, Dana A., Steenwyk, Jacob L., Hittinger, Chris Todd, Rokas, Antonis
Publicado 2019

Signatures of optimal codon usage in metabolic genes inform budding yeast ecology

por LaBella, Abigail Leavitt, Opulente, Dana A., Steenwyk, Jacob L., Hittinger, Chris Todd, Rokas, Antonis
Publicado 2021

Correction: Variation and selection on codon usage bias across an entire subphylum

por LaBella, Abigail L., Opulente, Dana A., Steenwyk, Jacob L., Hittinger, Chris Todd, Rokas, Antonis
Publicado 2021

Factors driving metabolic diversity in the budding yeast subphylum

por Opulente, Dana A., Rollinson, Emily J., Bernick-Roehr, Cleome, Hulfachor, Amanda Beth, Rokas, Antonis, Kurtzman, Cletus P., Hittinger, Chris Todd
Publicado 2018

Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution

por Krassowski, Tadeusz, Kominek, Jacek, Shen, Xing-Xing, Opulente, Dana A., Zhou, Xiaofan, Rokas, Antonis, Hittinger, Chris Todd, Wolfe, Kenneth H.
Publicado 2019

Nonlinear Fitness Consequences of Variation in Expression Level of a Eukaryotic Gene

por Rest, Joshua S., Morales, Christopher M., Waldron, John B., Opulente, Dana A., Fisher, Julius, Moon, Seungjae, Bullaughey, Kevin, Carey, Lucas B., Dedousis, Demitri
Publicado 2013

Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts

por Nalabothu, Rishitha L, Fisher, Kaitlin J, LaBella, Abigail Leavitt, Meyer, Taylor A, Opulente, Dana A, Wolters, John F, Rokas, Antonis, Hittinger, Chris Todd
Publicado 2023

Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota

por Shen, Xing-Xing, Steenwyk, Jacob L., LaBella, Abigail L., Opulente, Dana A., Zhou, Xiaofan, Kominek, Jacek, Li, Yuanning, Groenewald, Marizeth, Hittinger, Chris T., Rokas, Antonis
Publicado 2020

Saccharomycotina yeasts defy longstanding macroecological patterns

por David, Kyle T., Harrison, Marie-Claire, Opulente, Dana A., LaBella, Abigail L., Wolters, John F., Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Pennell, Matt, Hittinger, Chris Todd, Rokas, Antonis
Publicado 2023

Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids

por Langdon, Quinn K., Peris, David, Eizaguirre, Juan I., Opulente, Dana A., Buh, Kelly V., Sylvester, Kayla, Jarzyna, Martin, Rodríguez, María E., Lopes, Christian A., Libkind, Diego, Hittinger, Chris Todd
Publicado 2020

Diverse signatures of convergent evolution in cacti-associated yeasts

por Gonçalves, Carla, Harrison, Marie-Claire, Steenwyk, Jacob L., Opulente, Dana A., LaBella, Abigail L., Wolters, John F., Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Hittinger, Chris Todd, Rokas, Antonis
Publicado 2023

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage

por Gonçalves, Carla, Wisecaver, Jennifer H, Kominek, Jacek, Oom, Madalena Salema, Leandro, Maria José, Shen, Xing-Xing, Opulente, Dana A, Zhou, Xiaofan, Peris, David, Kurtzman, Cletus P, Hittinger, Chris Todd, Rokas, Antonis, Gonçalves, Paula
Publicado 2018

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

por Krassowski, Tadeusz, Coughlan, Aisling Y., Shen, Xing-Xing, Zhou, Xiaofan, Kominek, Jacek, Opulente, Dana A., Riley, Robert, Grigoriev, Igor V., Maheshwari, Nikunj, Shields, Denis C., Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis, Wolfe, Kenneth H.
Publicado 2018

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

por Steenwyk, Jacob L., Opulente, Dana A., Kominek, Jacek, Shen, Xing-Xing, Zhou, Xiaofan, Labella, Abigail L., Bradley, Noah P., Eichman, Brandt F., Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy, Hulfachor, Amanda Beth, Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis
Publicado 2019

Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces

por Peris, David, Ubbelohde, Emily J., Kuang, Meihua Christina, Kominek, Jacek, Langdon, Quinn K., Adams, Marie, Koshalek, Justin A., Hulfachor, Amanda Beth, Opulente, Dana A., Hall, David J., Hyma, Katie, Fay, Justin C., Leducq, Jean-Baptiste, Charron, Guillaume, Landry, Christian R., Libkind, Diego, Gonçalves, Carla, Gonçalves, Paula, Sampaio, José Paulo, Wang, Qi-Ming, Bai, Feng-Yan, Wrobel, Russel L., Hittinger, Chris Todd
Publicado 2023

Genomic and ecological factors shaping specialism and generalism across an entire subphylum

por Opulente, Dana A., Leavitt LaBella, Abigail, Harrison, Marie-Claire, Wolters, John F., Liu, Chao, Li, Yonglin, Kominek, Jacek, Steenwyk, Jacob L., Stoneman, Hayley R., VanDenAvond, Jenna, Miller, Caroline R., Langdon, Quinn K., Silva, Margarida, Gonçalves, Carla, Ubbelohde, Emily J., Li, Yuanning, Buh, Kelly V., Jarzyna, Martin, Haase, Max A. B., Rosa, Carlos A., Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy H., Beth Hulfachor, Amanda, Kurtzman, Cletus P., Sampaio, José Paulo, Gonçalves, Paula, Zhou, Xiaofan, Shen, Xing-Xing, Groenewald, Marizeth, Rokas, Antonis, Hittinger, Chris Todd
Publicado 2023