Asymmetric Conservation within Pairs of Co-Occurred Motifs Mediates Weak Direct Binding of Transcription Factors in ChIP-Seq Data

por Levitsky, Victor, Oshchepkov, Dmitry, Zemlyanskaya, Elena, Merkulova, Tatyana
Publicado 2020

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana

por Zemlyanskaya, Elena V., Levitsky, Victor G., Oshchepkov, Dmitry Y., Grosse, Ivo, Mironova, Victoria V.
Publicado 2017

Age-Dependent Changes in the Relationships between Traits Associated with the Pathogenesis of Stress-Sensitive Hypertension in ISIAH Rats

por Oshchepkov, Dmitry Yu., Makovka, Yulia V., Ponomarenko, Mikhail P., Redina, Olga E., Markel, Arcady L.
Publicado 2023

Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

por Levitsky, Victor G., Mukhin, Alexey M., Oshchepkov, Dmitry Yu., Zemlyanskaya, Elena V., Lashin, Sergey A.
Publicado 2022

A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

por Levitsky, Victor, Zemlyanskaya, Elena, Oshchepkov, Dmitry, Podkolodnaya, Olga, Ignatieva, Elena, Grosse, Ivo, Mironova, Victoria, Merkulova, Tatyana
Publicado 2019

A Rat Model of Human Behavior Provides Evidence of Natural Selection Against Underexpression of Aggressiveness-Related Genes in Humans

por Oshchepkov, Dmitry, Ponomarenko, Mikhail, Klimova, Natalya, Chadaeva, Irina, Bragin, Anatoly, Sharypova, Ekaterina, Shikhevich, Svetlana, Kozhemyakina, Rimma
Publicado 2019

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data

por Levitsky, Victor G, Kulakovskiy, Ivan V, Ershov, Nikita I, Oshchepkov, Dmitry Yu, Makeev, Vsevolod J, Hodgman, T C, Merkulova, Tatyana I
Publicado 2014

The complex role of transcription factor GAGA in germline death during Drosophila spermatogenesis: transcriptomic and bioinformatic analyses

por Fedorova, Svetlana, Dorogova, Natalya V., Karagodin, Dmitriy A., Oshchepkov, Dmitry Yu, Brusentsov, Ilya I., Klimova, Natalya V., Baricheva, Elina M.
Publicado 2023

Candidate SNP Markers of Atherogenesis Significantly Shifting the Affinity of TATA-Binding Protein for Human Gene Promoters Show Stabilizing Natural Selection as a Sum of Neutral D...

por Ponomarenko, Mikhail, Rasskazov, Dmitry, Chadaeva, Irina, Sharypova, Ekaterina, Drachkova, Irina, Oshchepkov, Dmitry, Ponomarenko, Petr, Savinkova, Ludmila, Oshchepkova, Evgeniya, Nazarenko, Maria, Kolchanov, Nikolay
Publicado 2020

Transcription Factors as Important Regulators of Changes in Behavior through Domestication of Gray Rats: Quantitative Data from RNA Sequencing

por Oshchepkov, Dmitry, Chadaeva, Irina, Kozhemyakina, Rimma, Shikhevich, Svetlana, Sharypova, Ekaterina, Savinkova, Ludmila, Klimova, Natalya V., Tsukanov, Anton, Levitsky, Victor G., Markel, Arcady L.
Publicado 2022

Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20Z(R)

por Akberdin, Ilya R., Collins, David A., Hamilton, Richard, Oshchepkov, Dmitry Y., Shukla, Anil K., Nicora, Carrie D., Nakayasu, Ernesto S., Adkins, Joshua N., Kalyuzhnaya, Marina G.
Publicado 2018

Domestication Explains Two-Thirds of Differential-Gene-Expression Variance between Domestic and Wild Animals; The Remaining One-Third Reflects Intraspecific and Interspecific Varia...

por Chadaeva, Irina, Ponomarenko, Petr, Kozhemyakina, Rimma, Suslov, Valentin, Bogomolov, Anton, Klimova, Natalya, Shikhevich, Svetlana, Savinkova, Ludmila, Oshchepkov, Dmitry, Kolchanov, Nikolay A., Markel, Arcady, Ponomarenko, Mikhail
Publicado 2021

Genes associated with cognitive performance in the Morris water maze: an RNA-seq study

por Reshetnikov, Vasiliy V., Kisaretova, Polina E., Ershov, Nikita I., Shulyupova, Anastasia S., Oshchepkov, Dmitry Yu., Klimova, Natalia V., Ivanchihina, Anna V., Merkulova, Tatiana I., Bondar, Natalia P.
Publicado 2020

A Bioinformatics Model of Human Diseases on the Basis of Differentially Expressed Genes (of Domestic Versus Wild Animals) That Are Orthologs of Human Genes Associated with Reproduc...

por Vasiliev, Gennady, Chadaeva, Irina, Rasskazov, Dmitry, Ponomarenko, Petr, Sharypova, Ekaterina, Drachkova, Irina, Bogomolov, Anton, Savinkova, Ludmila, Ponomarenko, Mikhail, Kolchanov, Nikolay, Osadchuk, Alexander, Oshchepkov, Dmitry, Osadchuk, Ludmila
Publicado 2021

Disruptive Selection of Human Immunostimulatory and Immunosuppressive Genes Both Provokes and Prevents Rheumatoid Arthritis, Respectively, as a Self-Domestication Syndrome

por Klimova, Natalya V., Oshchepkova, Evgeniya, Chadaeva, Irina, Sharypova, Ekaterina, Ponomarenko, Petr, Drachkova, Irina, Rasskazov, Dmitry, Oshchepkov, Dmitry, Ponomarenko, Mikhail, Savinkova, Ludmila, Kolchanov, Nikolay A., Kozlov, Vladimir
Publicado 2021

E. coli aggregation and impaired cell division after terahertz irradiation

por Peltek, Sergey, Meshcheryakova, Irina, Kiseleva, Elena, Oshchepkov, Dmitry, Rozanov, Alexei, Serdyukov, Danil, Demidov, Evgeniy, Vasiliev, Gennady, Vinokurov, Nikolay, Bryanskaya, Alla, Bannikova, Svetlana, Popik, Vasiliy, Goryachkovskaya, Tatyana
Publicado 2021

Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome

por Ponomarenko, Mikhail, Kleshchev, Maxim, Ponomarenko, Petr, Chadaeva, Irina, Sharypova, Ekaterina, Rasskazov, Dmitry, Kolmykov, Semyon, Drachkova, Irina, Vasiliev, Gennady, Gutorova, Natalia, Ignatieva, Elena, Savinkova, Ludmila, Bogomolov, Anton, Osadchuk, Ludmila, Osadchuk, Alexandr, Oshchepkov, Dmitry
Publicado 2020

Stress Reactivity, Susceptibility to Hypertension, and Differential Expression of Genes in Hypertensive Compared to Normotensive Patients

por Oshchepkov, Dmitry, Chadaeva, Irina, Kozhemyakina, Rimma, Zolotareva, Karina, Khandaev, Bato, Sharypova, Ekaterina, Ponomarenko, Petr, Bogomolov, Anton, Klimova, Natalya V., Shikhevich, Svetlana, Redina, Olga, Kolosova, Nataliya G., Nazarenko, Maria, Kolchanov, Nikolay A., Markel, Arcady, Ponomarenko, Mikhail
Publicado 2022

Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

por Shikhevich, Svetlana, Chadaeva, Irina, Khandaev, Bato, Kozhemyakina, Rimma, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Bogomolov, Anton, Klimova, Natalya V., Ivanisenko, Vladimir A., Demenkov, Pavel, Mustafin, Zakhar, Markel, Arcady, Savinkova, Ludmila, Kolchanov, Nikolay A., Kozlov, Vladimir, Ponomarenko, Mikhail
Publicado 2023

Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

por Bogomolov, Anton, Filonov, Sergey, Chadaeva, Irina, Rasskazov, Dmitry, Khandaev, Bato, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Ivanisenko, Vladimir A., Demenkov, Pavel, Podkolodnyy, Nikolay, Kondratyuk, Ekaterina, Ponomarenko, Petr, Podkolodnaya, Olga, Mustafin, Zakhar, Savinkova, Ludmila, Kolchanov, Nikolay, Tverdokhleb, Natalya, Ponomarenko, Mikhail
Publicado 2023