Similarities and differences in Alzheimer’s dementia comorbidities in racialized populations identified from electronic medical records

por Woldemariam, Sarah R., Tang, Alice S., Oskotsky, Tomiko T., Yaffe, Kristine, Sirota, Marina
Publicado 2023

Endometriosis in the era of precision medicine and impact on sexual and reproductive health across the lifespan and in diverse populations

por Giudice, Linda C., Oskotsky, Tomiko T., Falako, Simileoluwa, Opoku‐Anane, Jessica, Sirota, Marina
Publicado 2023

Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions

por Andrews, Shan V., Yang, Irene J., Froehlich, Karolin, Oskotsky, Tomiko, Sirota, Marina
Publicado 2022

Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants

por Oskotsky, Tomiko, Marić, Ivana, Tang, Alice, Oskotsky, Boris, Wong, Ronald J., Aghaeepour, Nima, Sirota, Marina, Stevenson, David K.
Publicado 2021

Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US

por Marić, Ivana, Oskotsky, Tomiko, Kosti, Idit, Le, Brian, Wong, Ronald J., Shaw, Gary M., Sirota, Marina, Stevenson, David K.
Publicado 2021

MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies

por Minot, Samuel S., Garb, Bailey, Roldan, Alennie, Tang, Alice S., Oskotsky, Tomiko T., Rosenthal, Christopher, Hoffman, Noah G., Sirota, Marina, Golob, Jonathan L.
Publicado 2023

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease

por Paranjpe, Manish D., Belonwu, Stella, Wang, Jason K., Oskotsky, Tomiko, Gupta, Aarzu, Taubes, Alice, Zalocusky, Kelly A., Paranjpe, Ishan, Glicksberg, Benjamin S., Huang, Yadong, Sirota, Marina
Publicado 2021

Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer’s Disease Across Two Brain Regions

por Belonwu, Stella A., Li, Yaqiao, Bunis, Daniel, Rao, Arjun Arkal, Solsberg, Caroline Warly, Tang, Alice, Fragiadakis, Gabriela K., Dubal, Dena B., Oskotsky, Tomiko, Sirota, Marina
Publicado 2021

Drugs in COVID‐19 Clinical Trials: Predicting Transporter‐Mediated Drug‐Drug Interactions Using In Vitro Assays and Real‐World Data

por Yee, Sook Wah, Vora, Bianca, Oskotsky, Tomiko, Zou, Ling, Jakobsen, Sebastian, Enogieru, Osatohanmwen J., Koleske, Megan L., Kosti, Idit, Rödin, Mattias, Sirota, Marina, Giacomini, Kathleen M.
Publicado 2021

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

por Rychkov, Dmitry, Neely, Jessica, Oskotsky, Tomiko, Yu, Steven, Perlmutter, Noah, Nititham, Joanne, Carvidi, Alexander, Krueger, Melissa, Gross, Andrew, Criswell, Lindsey A., Ashouri, Judith F., Sirota, Marina
Publicado 2021

Deep phenotyping of Alzheimer’s disease leveraging electronic medical records identifies sex-specific clinical associations

por Tang, Alice S., Oskotsky, Tomiko, Havaldar, Shreyas, Mantyh, William G., Bicak, Mesude, Solsberg, Caroline Warly, Woldemariam, Sarah, Zeng, Billy, Hu, Zicheng, Oskotsky, Boris, Dubal, Dena, Allen, Isabel E., Glicksberg, Benjamin S., Sirota, Marina
Publicado 2022

Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer’s Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regio...

por Belonwu, Stella A., Li, Yaqiao, Bunis, Daniel G., Rao, Arjun Arkal, Solsberg, Caroline Warly, Oskotsky, Tomiko, Taubes, Alice L., Grone, Brian, Zalocusky, Kelly A., Fragiadakis, Gabriela K., Huang, Yadong, Sirota, Marina
Publicado 2022

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

por Le, Brian L., Andreoletti, Gaia, Oskotsky, Tomiko, Vallejo-Gracia, Albert, Rosales, Romel, Yu, Katharine, Kosti, Idit, Leon, Kristoffer E., Bunis, Daniel G., Li, Christine, Kumar, G. Renuka, White, Kris M., García-Sastre, Adolfo, Ott, Melanie, Sirota, Marina
Publicado 2021

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

por Le, Brian L., Andreoletti, Gaia, Oskotsky, Tomiko, Vallejo-Gracia, Albert, Rosales, Romel, Yu, Katharine, Kosti, Idit, Leon, Kristoffer E., Bunis, Daniel G., Li, Christine, Kumar, G. Renuka, White, Kris M., García-Sastre, Adolfo, Ott, Melanie, Sirota, Marina
Publicado 2021

Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students

por Oskotsky, Tomiko, Bajaj, Ruchika, Burchard, Jillian, Cavazos, Taylor, Chen, Ina, Connell, William T., Eaneff, Stephanie, Grant, Tianna, Kanungo, Ishan, Lindquist, Karla, Myers-Turnbull, Douglas, Naing, Zun Zar Chi, Tang, Alice, Vora, Bianca, Wang, Jon, Karim, Isha, Swadling, Claire, Yang, Janice, Lindstaedt, Bill, Sirota, Marina
Publicado 2022

Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study

por Roger, Jacquelyn, Xie, Feng, Costello, Jean, Tang, Alice, Liu, Jay, Oskotsky, Tomiko, Woldemariam, Sarah, Kosti, Idit, Le, Brian, Snyder, Michael P., Giudice, Linda C., Torgerson, Dara, Shaw, Gary M., Stevenson, David K., Rajkovic, Aleksandar, Glymour, M. Maria, Aghaeepour, Nima, Cakmak, Hakan, Lathi, Ruth B., Sirota, Marina
Publicado 2023

Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients

por Sperry, Megan M., Oskotsky, Tomiko T., Marić, Ivana, Kaushal, Shruti, Takeda, Takako, Horvath, Viktor, Powers, Rani K., Rodas, Melissa, Furlong, Brooke, Soong, Mercy, Prabhala, Pranav, Goyal, Girija, Carlson, Kenneth E., Wong, Ronald J., Kosti, Idit, Le, Brian L., Logue, James, Hammond, Holly, Frieman, Matthew, Stevenson, David K., Ingber, Donald E., Sirota, Marina, Novak, Richard
Publicado 2023

VMAP: Vaginal Microbiome Atlas During Pregnancy

por Parraga-Leo, Antonio, Oskotsky, Tomiko T., Oskotsky, Boris, Wibrand, Camilla, Roldan, Alennie, Tang, Alice, Ha, Connie W.Y., Wong, Ronald J., Minot, Samuel S., Andreoletti, Gaia, Kosti, Idit, Theis, Kevin R., Ng, Sherrianne, Lee, Yun S., Diaz-Gimeno, Patricia, Bennett, Phillip R., MacIntyre, David A., Lynch, Susan V., Romero, Roberto, Tarca, Adi L., Stevenson, David K., Aghaeepour, Nima, Golob, Jonathan, Sirota, Marina
Publicado 2023

Sex differences in viral entry protein expression and host transcript responses to SARS-CoV-2

por Sun, Mengying, Shankar, Rama, Ko, Meehyun, Chang, Christopher Daniel, Yeh, Shan-Ju, Li, Shilong, Liu, Ke, Zhou, Guoli, Xing, Jing, VanVelsen, Austin, VanVelsen, Tyler, Paithankar, Shreya, Feng, Benjamin Y., Young, Krista, Strug, Michael, Turco, Lauren, Wang, Zichen, Schadt, Eric, Chen, Rong, Li, Xiaohong, Oskotsky, Tomiko, Sirota, Marina, Glicksberg, Benjamin S., Nadkarni, Girish N., Moeser, Adam J., Li, Li, Kim, Seungtaek, Zhou, Jiayu, Chen, Bin
Publicado 2020

Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research

por Golob, Jonathan L., Oskotsky, Tomiko T., Tang, Alice S., Roldan, Alennie, Chung, Verena, Ha, Connie W.Y., Wong, Ronald J., Flynn, Kaitlin J., Parraga-Leo, Antonio, Wibrand, Camilla, Minot, Samuel S., Andreoletti, Gaia, Kosti, Idit, Bletz, Julie, Nelson, Amber, Gao, Jifan, Wei, Zhoujingpeng, Chen, Guanhua, Tang, Zheng-Zheng, Novielli, Pierfrancesco, Romano, Donato, Pantaleo, Ester, Amoroso, Nicola, Monaco, Alfonso, Vacca, Mirco, De Angelis, Maria, Bellotti, Roberto, Tangaro, Sabina, Kuntzleman, Abigail, Bigcraft, Isaac, Techtmann, Stephen, Bae, Daehun, Kim, Eunyoung, Jeon, Jongbum, Joe, Soobok, Theis, Kevin R., Ng, Sherrianne, Lee Li, Yun S., Diaz-Gimeno, Patricia, Bennett, Phillip R., MacIntyre, David A., Stolovitzky, Gustavo, Lynch, Susan V., Albrecht, Jake, Gomez-Lopez, Nardhy, Romero, Roberto, Stevenson, David K., Aghaeepour, Nima, Tarca, Adi L., Costello, James C., Sirota, Marina
Publicado 2023