Cell ontology in an age of data-driven cell classification

por Osumi-Sutherland, David
Publicado 2017

The Drosophila anatomy ontology

por Costa, Marta, Reeve, Simon, Grumbling, Gary, Osumi-Sutherland, David
Publicado 2013

Dead simple OWL design patterns

por Osumi-Sutherland, David, Courtot, Melanie, Balhoff, James P., Mungall, Christopher
Publicado 2017

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis

por Osumi-Sutherland, David J., Ponta, Enrico, Courtot, Melanie, Parkinson, Helen, Badi, Laura
Publicado 2018

Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions

por Hoehndorf, Robert, Hardy, Nigel W., Osumi-Sutherland, David, Tweedie, Susan, Schofield, Paul N., Gkoutos, Georgios V.
Publicado 2013

PhenoImageShare: an image annotation and query infrastructure

por Adebayo, Solomon, McLeod, Kenneth, Tudose, Ilinca, Osumi-Sutherland, David, Burdett, Tony, Baldock, Richard, Burger, Albert, Parkinson, Helen
Publicado 2016

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

por Dahdul, Wasila M, Cui, Hong, Mabee, Paula M, Mungall, Christopher J, Osumi-Sutherland, David, Walls, Ramona L, Haendel, Melissa A
Publicado 2014

TermGenie – a web-application for pattern-based ontology class generation

por Dietze, Heiko, Berardini, Tanya Z, Foulger, Rebecca E, Hill, David P, Lomax, Jane, Osumi-Sutherland, David, Roncaglia, Paola, Mungall, Christopher J
Publicado 2014

COVoc and COVTriage: novel resources to support literature triage

por Caucheteur, Déborah, May Pendlington, Zoë, Roncaglia, Paola, Gobeill, Julien, Mottin, Luc, Matentzoglu, Nicolas, Agosti, Donat, Osumi-Sutherland, David, Parkinson, Helen, Ruch, Patrick
Publicado 2022

Cell type discovery using single-cell transcriptomics: implications for ontological representation

por Aevermann, Brian D, Novotny, Mark, Bakken, Trygve, Miller, Jeremy A, Diehl, Alexander D, Osumi-Sutherland, David, Lasken, Roger S, Lein, Ed S, Scheuermann, Richard H
Publicado 2018

FlyBase: enhancing Drosophila Gene Ontology annotations

por Tweedie, Susan, Ashburner, Michael, Falls, Kathleen, Leyland, Paul, McQuilton, Peter, Marygold, Steven, Millburn, Gillian, Osumi-Sutherland, David, Schroeder, Andrew, Seal, Ruth, Zhang, Haiyan
Publicado 2009

Bacterial Virus Ontology; Coordinating across Databases

por Hulo, Chantal, Masson, Patrick, Toussaint, Ariane, Osumi-Sutherland, David, de Castro, Edouard, Auchincloss, Andrea H., Poux, Sylvain, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2017

Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas

por Herr, Bruce W., Hardi, Josef, Quardokus, Ellen M., Bueckle, Andreas, Chen, Lu, Wang, Fusheng, Caron, Anita R., Osumi-Sutherland, David, Musen, Mark A., Börner, Katy
Publicado 2023

The Drosophila phenotype ontology

por Osumi-Sutherland, David, Marygold, Steven J, Millburn, Gillian H, McQuilton, Peter A, Ponting, Laura, Stefancsik, Raymund, Falls, Kathleen, Brown, Nicholas H, Gkoutos, Georgios V
Publicado 2013

Meeting report: advancing practical applications of biodiversity ontologies

por Walls, Ramona L, Guralnick, Robert, Deck, John, Buntzman, Adam, Buttigieg, Pier Luigi, Davies, Neil, Denslow, Michael W, Gallery, Rachel E, Parnell, J Jacob, Osumi-Sutherland, David, Robbins, Robert J, Rocca-Serra, Philippe, Wieczorek, John, Zheng, Jie
Publicado 2014

Virtual Fly Brain—An interactive atlas of the Drosophila nervous system

por Court, Robert, Costa, Marta, Pilgrim, Clare, Millburn, Gillian, Holmes, Alex, McLachlan, Alex, Larkin, Aoife, Matentzoglu, Nicolas, Kir, Huseyin, Parkinson, Helen, Brown, Nicolas H., O’Kane, Cahir J., Armstrong, J. Douglas, Jefferis, Gregory S. X. E., Osumi-Sutherland, David
Publicado 2023

Guidelines for the functional annotation of microRNAs using the Gene Ontology

por Huntley, Rachael P., Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E., Howe, Doug, Kalea, Anastasia Z., Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R., Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C.
Publicado 2016

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

por Diehl, Alexander D., Meehan, Terrence F., Bradford, Yvonne M., Brush, Matthew H., Dahdul, Wasila M., Dougall, David S., He, Yongqun, Osumi-Sutherland, David, Ruttenberg, Alan, Sarntivijai, Sirarat, Van Slyke, Ceri E., Vasilevsky, Nicole A., Haendel, Melissa A., Blake, Judith A., Mungall, Christopher J.
Publicado 2016

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

por Fisher, Malcolm E., Segerdell, Erik, Matentzoglu, Nicolas, Nenni, Mardi J., Fortriede, Joshua D., Chu, Stanley, Pells, Troy J., Osumi-Sutherland, David, Chaturvedi, Praneet, James-Zorn, Christina, Sundararaj, Nivitha, Lotay, Vaneet S., Ponferrada, Virgilio, Wang, Dong Zhuo, Kim, Eugene, Agalakov, Sergei, Arshinoff, Bradley I., Karimi, Kamran, Vize, Peter D., Zorn, Aaron M.
Publicado 2022

Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies

por Tan, Shawn Zheng Kai, Kir, Huseyin, Aevermann, Brian D., Gillespie, Tom, Harris, Nomi, Hawrylycz, Michael J., Jorstad, Nikolas L., Lein, Ed S., Matentzoglu, Nicolas, Miller, Jeremy A., Mollenkopf, Tyler S., Mungall, Christopher J., Ray, Patrick L., Sanchez, Raymond E. A., Staats, Brian, Vermillion, Jim, Yadav, Ambika, Zhang, Yun, Scheuermann, Richard H., Osumi-Sutherland, David
Publicado 2023