Origins and Evolution of Seasonal Human Coronaviruses

por Otieno, James R., Cherry, Joshua L., Spiro, David J., Nelson, Martha I., Trovão, Nídia S.
Publicado 2022

Rapid Spread and Diversification of Respiratory Syncytial Virus Genotype ON1, Kenya

por Agoti, Charles N., Otieno, James R., Gitahi, Caroline W., Cane, Patricia A., Nokes, D. James
Publicado 2014

Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007–2016

por Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N., Nokes, D. James
Publicado 2019

Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on

por Kamau, Everlyn, Otieno, James R., Lewa, Clement S., Mwema, Anthony, Murunga, Nickson, Nokes, D. James, Agoti, Charles N.
Publicado 2020

Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence

por Agoti, Charles N., Otieno, James R., Ngama, Mwanajuma, Mwihuri, Alexander G., Medley, Graham F., Cane, Patricia A., Nokes, D. James
Publicado 2015

Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011–2014

por Oketch, John W., Kamau, Everlyn, Otieno, James R., Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James, Agoti, Charles N.
Publicado 2021

Spatial‐temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype

por Wangui, Julia, Nokes, D. James, Mobegi, Victor A., Otieno, James R., Agoti, Charles N., Ngeranwa, Joseph J.N., Bulimo, Wallace D.
Publicado 2021

Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing

por Agoti, Charles N., Otieno, James R., Munywoki, Patrick K., Mwihuri, Alexander G., Cane, Patricia A., Nokes, D. James, Kellam, Paul, Cotten, Matthew
Publicado 2015

Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya

por Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F., Cane, Patricia A., Nokes, D. James
Publicado 2016

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya

por Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F., Cane, Patricia A., Nokes, D. James
Publicado 2017

Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants

por Musimbi, Zaneta D., Rono, Martin K., Otieno, James R., Kibinge, Nelson, Ochola-Oyier, Lynette Isabella, de Villiers, Etienne Pierre, Nduati, Eunice W.
Publicado 2019

Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010–2015

por Otieno, James R., Kamau, Everlyn M., Agoti, Charles N., Lewa, Clement, Otieno, Grieven, Bett, Ann, Ngama, Mwanajuma, Cane, Patricia A., Nokes, D. James
Publicado 2017

As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile

por Hargreaves, Katherine R., Otieno, James R., Thanki, Anisha, Blades, Matthew J., Millard, Andrew D., Browne, Hilary P., Lawley, Trevor D., Clokie, Martha R.J.
Publicado 2015

Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009‐2017

por Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S., Nokes, D. James
Publicado 2020

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17

por Kamau, Everlyn, Otieno, James R, Murunga, Nickson, Oketch, John W, Ngoi, Joyce M, de Laurent, Zaydah R, Mwema, Anthony, Nyiro, Joyce U, Agoti, Charles N, Nokes, D James
Publicado 2020

Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season

por Nyasimi, Festus M, Owuor, David Collins, Ngoi, Joyce M, Mwihuri, Alexander G, Otieno, Grieven P, Otieno, James R, Githinji, George, Nyiro, Joyce U, Nokes, David James, Agoti, Charles N
Publicado 2020

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis

por Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotten, Matthew, Nokes, D. James
Publicado 2017

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis

por Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotton, Matthew, Nokes, D. James
Publicado 2017

Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya

por Agoti, Charles N, Mayieka, Lillian M, Otieno, James R, Ahmed, Jamal A, Fields, Barry S, Waiboci, Lilian W, Nyoka, Raymond, Eidex, Rachel B, Marano, Nina, Burton, Wagacha, Montgomery, Joel M, Breiman, Robert F, Nokes, D James
Publicado 2014

Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya

por Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D James, Cotten, Matthew
Publicado 2018