JOA: Joint Overlap Analysis of multiple genomic interval sets

por Otlu, Burçak, Can, Tolga
Publicado 2019

Topography of mutational signatures in human cancer

por Otlu, Burçak, Díaz-Gay, Marcos, Vermes, Ian, Bergstrom, Erik N., Zhivagui, Maria, Barnes, Mark, Alexandrov, Ludmil B.
Publicado 2023

Author Correction: DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer

por Zhivagui, Maria, Hoda, Areebah, Valenzuela, Noelia, Yeh, Yi-Yu, Dai, Jason, He, Yudou, Nandi, Shuvro P., Otlu, Burcak, Van Houten, Bennett, Alexandrov, Ludmil B.
Publicado 2023

DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer

por Zhivagui, Maria, Hoda, Areebah, Valenzuela, Noelia, Yeh, Yi-Yu, Dai, Jason, He, Yudou, Nandi, Shuvro P., Otlu, Burcak, Van Houten, Bennett, Alexandrov, Ludmil B.
Publicado 2023

The genomic and epigenomic evolutionary history of papillary renal cell carcinomas

por Zhu, Bin, Poeta, Maria Luana, Costantini, Manuela, Zhang, Tongwu, Shi, Jianxin, Sentinelli, Steno, Zhao, Wei, Pompeo, Vincenzo, Cardelli, Maurizio, Alexandrov, Boian S., Otlu, Burcak, Hua, Xing, Jones, Kristine, Brodie, Seth, Dabrowska, Malgorzata Ewa, Toro, Jorge R., Yeager, Meredith, Wang, Mingyi, Hicks, Belynda, Alexandrov, Ludmil B., Brown, Kevin M., Wedge, David C., Chanock, Stephen, Fazio, Vito Michele, Gallucci, Michele, Landi, Maria Teresa
Publicado 2020

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

por Islam, S.M. Ashiqul, Díaz-Gay, Marcos, Wu, Yang, Barnes, Mark, Vangara, Raviteja, Bergstrom, Erik N., He, Yudou, Vella, Mike, Wang, Jingwei, Teague, Jon W., Clapham, Peter, Moody, Sarah, Senkin, Sergey, Li, Yun Rose, Riva, Laura, Zhang, Tongwu, Gruber, Andreas J., Steele, Christopher D., Otlu, Burçak, Khandekar, Azhar, Abbasi, Ammal, Humphreys, Laura, Syulyukina, Natalia, Brady, Samuel W., Alexandrov, Boian S., Pillay, Nischalan, Zhang, Jinghui, Adams, David J., Martincorena, Iñigo, Wedge, David C., Landi, Maria Teresa, Brennan, Paul, Stratton, Michael R., Rozen, Steven G., Alexandrov, Ludmil B.
Publicado 2022

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

por Petljak, Mia, Alexandrov, Ludmil B., Brammeld, Jonathan S., Price, Stacey, Wedge, David C., Grossmann, Sebastian, Dawson, Kevin J., Ju, Young Seok, Iorio, Francesco, Tubio, Jose M.C., Koh, Ching Chiek, Georgakopoulos-Soares, Ilias, Rodríguez–Martín, Bernardo, Otlu, Burçak, O’Meara, Sarah, Butler, Adam P., Menzies, Andrew, Bhosle, Shriram G., Raine, Keiran, Jones, David R., Teague, Jon W., Beal, Kathryn, Latimer, Calli, O’Neill, Laura, Zamora, Jorge, Anderson, Elizabeth, Patel, Nikita, Maddison, Mark, Ng, Bee Ling, Graham, Jennifer, Garnett, Mathew J., McDermott, Ultan, Nik-Zainal, Serena, Campbell, Peter J., Stratton, Michael R.
Publicado 2019