Transmissibility of emerging viral zoonoses

por Walker, Joseph W., Han, Barbara A., Ott, Isabel M., Drake, John M.
Publicado 2018

Method versatility in RNA extraction-free PCR detection of SARS-CoV-2 in saliva samples

por Allicock, Orchid M., Yolda-Carr, Devyn, Earnest, Rebecca, Breban, Mallery I., Vega, Noel, Ott, Isabel M., Kalinich, Chaney, Alpert, Tara, Wyllie, Anne L.
Publicado 2023

Real-time public health communication of local SARS-CoV-2 genomic epidemiology

por Kalinich, Chaney C., Jensen, Cole G., Neugebauer, Peter, Petrone, Mary E., Peña-Hernández, Mario, Ott, Isabel M., Wyllie, Anne L., Alpert, Tara, Vogels, Chantal B. F., Fauver, Joseph R., Grubaugh, Nathan D., Brito, Anderson F.
Publicado 2020

362. Saliva as a Reliable Sample Type for Mass SARS-CoV-2 Testing Strategies

por Wyllie, Anne, Vogels, Chantal B, Allicock, Orchid M, Watkins, Anne, Petrone, Mary, Yolda-Carr, Devyn, Harden, Christina, Brackney, Doug, Kalinich, Chaney C, Breban, Mallery I, Ott, Isabel M, Sikka, Robby, Kadiri, Lolahon, Grubaugh, Nathan D
Publicado 2021

Detection of pneumococcus during hospitalization for SARS-CoV-2

por Stahlfeld, Anne, Glick, Laura R, Ott, Isabel M, Craft, Samuel B, Yolda-Carr, Devyn, Harden, Christina A, Nakahata, Maura, Farhadian, Shelli F, Grant, Lindsay R, Alexander-Parrish, Ronika, Arguedas, Adriano, Gessner, Bradford D, Weinberger, Daniel M, Wyllie, Anne L
Publicado 2022

Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies

por Kissler, Stephen M., Fauver, Joseph R., Mack, Christina, Olesen, Scott W., Tai, Caroline, Shiue, Kristin Y., Kalinich, Chaney C., Jednak, Sarah, Ott, Isabel M., Vogels, Chantal B. F., Wohlgemuth, Jay, Weisberger, James, DiFiori, John, Anderson, Deverick J., Mancell, Jimmie, Ho, David D., Grubaugh, Nathan D., Grad, Yonatan H.
Publicado 2021

301. Detection of Pneumococcal Pneumonia During SARS-CoV-2 Infection

por Watkins, Anne, Yolda-Carr, Devyn, Ott, Isabel M, Nakahata, Maura, Moore, Adam, Muenker, M Catherine, Tokuyama, Maria, Vogels, Chantal B, Campbell, Melissa, Datta, Rupak, Cruz, Charles Dela, Farhadian, Shelli F, Iwasaki, Akiko, Ko, Albert I, Grubaugh, Nathan D, Alexander-Parrish, Ronika, Arguedas, Adriano, Gessner, Bradford D, Weinberger, Daniel, Wyllie, Anne
Publicado 2021

Detection of SARS-CoV-2 RNA by multiplex RT-qPCR

por Kudo, Eriko, Israelow, Benjamin, Vogels, Chantal B. F., Lu, Peiwen, Wyllie, Anne L., Tokuyama, Maria, Venkataraman, Arvind, Brackney, Doug E., Ott, Isabel M., Petrone, Mary E., Earnest, Rebecca, Lapidus, Sarah, Muenker, M. Catherine, Moore, Adam J., Casanovas-Massana, Arnau, Omer, Saad B., Dela Cruz, Charles S., Farhadian, Shelli F., Ko, Albert I., Grubaugh, Nathan D., Iwasaki, Akiko
Publicado 2020

Simply saliva: stability of SARS-CoV-2 detection negates the need for expensive collection devices

por Ott, Isabel M., Strine, Madison S., Watkins, Anne E., Boot, Maikel, Kalinich, Chaney C., Harden, Christina A., Vogels, Chantal B.F., Casanovas-Massana, Arnau, Moore, Adam J., Muenker, M. Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S., Farhadian, Shelli F., Ko, Albert I., Iwasaki, Akiko, Grubaugh, Nathan D., Wilen, Craig B., Wyllie, Anne L.
Publicado 2020

Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva

por Ott, Isabel M., Strine, Madison S., Watkins, Anne E., Boot, Maikel, Kalinich, Chaney C., Harden, Christina A., Vogels, Chantal B.F., Casanovas-Massana, Arnau, Moore, Adam J., Muenker, M. Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S., Farhadian, Shelli F., Ko, Albert I., Iwasaki, Akiko, Grubaugh, Nathan D., Wilen, Craig B., Wyllie, Anne L.
Publicado 2021

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B.F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle, Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2021

DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus

por Vogels, Chantal B.F., Hill, Verity, Breban, Mallery I., Chaguza, Chrispin, Paul, Lauren M., Sodeinde, Afeez, Taylor-Salmon, Emma, Ott, Isabel M., Petrone, Mary E., Dijk, Dennis, Jonges, Marcel, Welkers, Matthijs R.A., Locksmith, Timothy, Dong, Yibo, Tarigopula, Namratha, Tekin, Omer, Schmedes, Sarah, Bunch, Sylvia, Cano, Natalia, Jaber, Rayah, Panzera, Charles, Stryker, Ian, Vergara, Julieta, Zimler, Rebecca, Kopp, Edgar, Heberlein, Lea, Morrison, Andrea M., Michael, Scott F., Grubaugh, Nathan D.
Publicado 2023

Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons

por Chaguza, Chrispin, Coppi, Andreas, Earnest, Rebecca, Ferguson, David, Kerantzas, Nicholas, Warner, Frederick, Young, H. Patrick, Breban, Mallery I., Billig, Kendall, Koch, Robert Tobias, Pham, Kien, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Hahn, Anne M., Tikhonova, Irina R., Castaldi, Christopher, De Kumar, Bony, Pettker, Christian M., Warren, Joshua L., Weinberger, Daniel M., Landry, Marie L., Peaper, David R., Schulz, Wade, Vogels, Chantal B.F., Grubaugh, Nathan D.
Publicado 2022

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Nika, Ioanna, van der Lugt, Mart J., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B. F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle A., Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F., Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L., Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2022

Diverse Functional Autoantibodies in Patients with COVID-19

por Wang, Eric Y., Mao, Tianyang, Klein, Jon, Dai, Yile, Huck, John D., Liu, Feimei, Zheng, Neil S., Zhou, Ting, Israelow, Benjamin, Wong, Patrick, Lucas, Carolina, Silva, Julio, Oh, Ji Eun, Song, Eric, Perotti, Emily S., Fischer, Suzanne, Campbell, Melissa, Fournier, John B., Wyllie, Anne L., Vogels, Chantal B. F., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Watkins, Anne E., Cruz, Charles Dela, Farhadian, Shelli F., Schulz, Wade L., Grubaugh, Nathan D., Ko, Albert I., Iwasaki, Akiko, Ring, Aaron M.
Publicado 2021

Sex differences in immune responses to SARS-CoV-2 that underlie disease outcomes

por Takahashi, Takehiro, Wong, Patrick, Ellingson, Mallory K., Lucas, Carolina, Klein, Jon, Israelow, Benjamin, Silva, Julio, Oh, Ji Eun, Mao, Tianyang, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y., Wyllie, Anne L., Vogels, Chantal B.F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Casanovas-Massana, Arnau, Cruz, Charles Dela, Fournier, John B., Odio, Camila D., Farhadian, Shelli, Grubaugh, Nathan D., Schulz, Wade L., Ko, Albert I., Ring, Aaron M., Omer, Saad B., Iwasaki, Akiko
Publicado 2020

Sex differences in immune responses that underlie COVID-19 disease outcomes

por Takahashi, Takehiro, Ellingson, Mallory K., Wong, Patrick, Israelow, Benjamin, Lucas, Carolina, Klein, Jon, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y., Casanovas-Massana, Arnau, Wyllie, Anne L., Vogels, Chantal B.F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Shaw, Albert, Fournier, John B., Odio, Camila D., Farhadian, Shelli, Cruz, Charles Dela, Grubaugh, Nathan D., Schulz, Wade L., Ring, Aaron M., Ko, Albert I., Omer, Saad B., Iwasaki, Akiko
Publicado 2020

Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality

por Silva, Julio, Lucas, Carolina, Sundaram, Maria, Israelow, Benjamin, Wong, Patrick, Klein, Jon, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Liu, Feimei, Mao, Tianyang, Oh, Ji Eun, Park, Annsea, Casanovas-Massana, Arnau, Vogels, Chantal B. F., Muenker, M. Catherine, Zell, Joseph, Fournier, John B., Campbell, Melissa, Chiorazzi, Michael, Fuentes, Edwin Ruiz, Petrone, Mary E, Kalinich, Chaney C., Ott, Isabel M., Watkins, Annie, Moore, Adam J., Nakahata, Maura, Farhadian, Shelli, Cruz, Charles Dela, Ko, Albert I., Schulz, Wade L., Ring, Aaron, Ma, Shuangge, Omer, Saad, Wyllie, Anne L, Iwasaki, Akiko
Publicado 2021

SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity

por Vogels, Chantal B.F., Watkins, Anne E., Harden, Christina A., Brackney, Doug E., Shafer, Jared, Wang, Jianhui, Caraballo, César, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Kudo, Eriko, Lu, Peiwen, Venkataraman, Arvind, Tokuyama, Maria, Moore, Adam J., Muenker, M. Catherine, Casanovas-Massana, Arnau, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Nelson, Allison, Dela Cruz, Charles S., Ko, Albert I., Iwasaki, Akiko, Krumholz, Harlan M., Matheus, J.D., Hui, Pei, Liu, Chen, Farhadian, Shelli F., Sikka, Robby, Wyllie, Anne L., Grubaugh, Nathan D.
Publicado 2021

Longitudinal analyses reveal immunological misfiring in severe COVID-19

por Lucas, Carolina, Wong, Patrick, Klein, Jon, Castro, Tiago B.R., Silva, Julio, Sundaram, Maria, Ellingson, Mallory K., Mao, Tianyang, Oh, Ji Eun, Israelow, Benjamin, Takahashi, Takehiro, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Mohanty, Subhasis, Wang, Haowei, Wyllie, Anne L., Vogels, Chantal B.F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Muenker, M. Catherine, Fournier, John B., Campbell, Melissa, Odio, Camila D., Casanovas-Massana, Arnau, Herbst, Roy, Shaw, Albert C., Medzhitov, Ruslan, Schulz, Wade L., Grubaugh, Nathan D., Cruz, Charles Dela, Farhadian, Shelli, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko
Publicado 2020